Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3675 163 4e-35 >seq3675 Length=4586 Score = 163 bits (180), Expect = 4e-35 Identities = 573/876 (65%), Gaps = 29/876 (3%) Strand=Plus/Minus Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 ||||||| | | ||| || ||||| |||||||| || |||| ||| | ||||||| Sbjct 1570 ACTTTGGCAAGCAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACT 1511 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTGGTTAC 111341 | || || || || ||||| |||| ||||| || ||||| || | ||||| | Sbjct 1510 GGATGATCTCCGTGCACAAGTT---ACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGC 1454 Query 111342 TCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 | || |||||| | ||||||||||||||||| || || || || || || || Sbjct 1453 TTTTGCGGTTGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTGACTTT 1394 Query 111402 TGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGT---CCCTCCG 111458 || || ||| | || ||| | | ||| ||| || | ||||| | Sbjct 1393 CAAGGATTTTGAACCACAATTCCTGGGCGCGGA---TGGTCTTGAACCCTTTGCCCTCTG 1337 Query 111459 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTG 111518 |||||||||| | ||| | || ||| |||||||| ||| | ||| || | | Sbjct 1336 CCTCGTACTTGGCGTACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTACGGG 1277 Query 111519 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578 || || |||||||| | | ||| || || | || || |||||||||||||||| Sbjct 1276 CCACGTTGGGACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAGGT 1217 Query 111579 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 111638 |||| ||||||| | | || || || | || || | |||||||| ||||| Sbjct 1216 CTGGGATCCACATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTT-T 1158 Query 111639 GTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 111697 || | || || | |||||| | | ||||||||||| |||||||| || | |||| Sbjct 1157 TTCTTCAAATCCAAGAACTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCGAAC 1098 Query 111698 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 111754 || ||||| || | || |||| | || || || || ||| |||| || ||||| Sbjct 1097 GAGCCCTTGCGCTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGC 1038 Query 111755 AGCATTGGAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATT-GG 111812 ||||| || || || || | || | | ||| || || |||||||| || | || || Sbjct 1037 AGCATGGGGATGATGCCGT-TGCTGGAACCGTTGGTGCCCCGAAT-GTAGCTGCCTTGGG 980 Query 111813 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCA-C 111869 | | | |||||| | || || ||||| || |||| ||| ||||| Sbjct 979 AGCGAATGCCGTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCGCAGG 920 Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929 ||| | ||| || | ||||| || | ||| ||| ||||| ||| | | ||||| Sbjct 919 ACTTC--AAG-GTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCATGGTCAGCAAGAAGC 863 Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 111989 | || | |||||| | ||| || || || ||||||||||| || || |||||| ||| Sbjct 862 ACGAGGCGAGCTGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGTGA 803 Query 111990 ACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 | ||| | | | |||| || ||| ||||| | | || ||||| | |||| Sbjct 802 A-GTACATGTTGCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTTGTGG 744 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || ||||| | || ||||||| ||||| ||| ||| Sbjct 743 ATACCGATGGAAACGCGCATGAGCATGTGCTGCGGG 708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721 |||||||||||| |||||| ||||| || | ||| ||| ||||| || || Sbjct 2139 GTGCTTGTTGACGCACGTAAACTCTCCTGCAAGCACACGTCTGTTGTACATGTTGGTCGT 2080 Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 ||||||||| |||||||| || || |||| ||||||| ||| ||||| || |||||||| Sbjct 2079 GTATGGTTCGAAGCATTCGTTGTTTCCCATAATTTGTGAGGTCGAGGCCGTCGGCATTGG 2020 Query 110782 TGC 110784 || Sbjct 2019 CGC 2017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627976356364800