Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3675 134 2e-26 seq3919 104 3e-17 >seq3675 Length=4586 Score = 134 bits (148), Expect = 2e-26 Identities = 627/971 (65%), Gaps = 47/971 (5%) Strand=Plus/Minus Query 118699 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 118758 |||| || | | ||| ||||||| || || || | |||| ||| ||||||||| Sbjct 1570 ACTTTGGCAAGCAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACT 1511 Query 118759 CTATAATTTCCGTGCACAAGTTTGAACTC---TTAATGGTGCCCAAGTTCTTTTGATTTG 118815 || || |||||||||||||| |||| ||||| || |||||||| | || || | Sbjct 1510 GGATGATCTCCGTGCACAAGTT---ACTCGATTTAATAGTTCCCAAGTTTTGCTGGTT-G 1455 Query 118816 ACTTTGTG-TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 |||| | || || | |||||||| |||||||| || || || || || ||| || Sbjct 1454 CTTTTGCGGTTGCAAGAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTG--AC 1397 Query 118875 TTG--AGAATAGCCTTCCAGACATCGGCAGCTGGCACAG-TGGCGTTGG---CTCGCCCC 118928 || || || ||| | || | | ||| | | ||| ||| || ||| Sbjct 1396 TTTCAAGGATTTTGAACCACAATTC--CTG--GGCGCGGATGGTCTTGAACCCTTTGCCC 1341 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 ||| |||||||||| | ||| | || ||| ||||| || ||| || || || Sbjct 1340 TCTGCCTCGTACTTGGCGTACAAGGTTTCGAACTCCTCGCCCCAGGTTTCGTGCAGGTTA 1281 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 | ||| | || ||||| | | ||| || || | || || ||||||||||| Sbjct 1280 CGGGCCACGTTGGGACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAA 1221 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 |||||||||||||| | ||| |||| || || || ||| || | || || || || Sbjct 1220 AGGTCTGGGATCCACATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGG 1161 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || ||| ||||| || || | | |||||||||||||| || ||||||| ||| Sbjct 1160 TTTTTCTTCAAATCCAAGAACTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCG 1101 Query 119169 ATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACA 119225 | || ||||| || | || | |||| || |||| || ||| |||| || || Sbjct 1100 AACGAGCCCTTGCGCTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACG 1041 Query 119226 CGAAGCATTGGAATGATACCATCGGATTGG--CCATTTGTCCCCCGAA--TACGAGACTT 119281 || ||||| || ||||| || | | ||| || || || ||||||| || | || Sbjct 1040 CGCAGCATGGGGATGATGCCGTTG--CTGGAACCGTTGGTGCCCCGAATGTAGCTGCCT- 984 Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341 | || | | |||||||| | ||| || ||||| || |||| ||| || Sbjct 983 -TGGGAGCGAATGCCGTGGATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGC 925 Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401 ||| | | | || |||||||||| ||||| ||| |||| | | | || || Sbjct 924 GCAGGACTTCAAGGTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCAT---GGTCAGCAA 868 Query 119402 GCAGCTCGA---CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 | ||| ||| | || || | || || || ||||||||||| || || || ||||| Sbjct 867 GAAGCACGAGGCGAGCTGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTG 808 Query 119459 GATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCC 119516 |||| ||| | | | |||| || ||||||||| | | || | ||||| | Sbjct 807 AGTGAA-GTACATGTTGCTCATCAAGTTGTAGGTCTCGATCGCTCGCTCG-ATGTCCGCT 750 Query 119517 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTG-GGGTGTT--TCCATCAGGATA 119573 ||| |||||||| || || ||||| | ||||| || ||| | | | ||| || Sbjct 749 TTGTGGATACCGATGGAAACGCGCATGAGCATGTGCTGCGGGCGCTCGACGATCTGG--- 693 Query 119574 CCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCG 119633 || | || | || ||||| | |||||||||| |||| || || ||| | | || Sbjct 692 CCGTTGATCTTCAAAAGGTAGGCCCTCTCCAAGGTTTTGAACCCGAAGTAGTCGTACCCG 633 Query 119634 TAGTCCCGCTT 119644 |||| ||||| Sbjct 632 AAGTCGCGCTT 622 >seq3919 Length=4506 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| ||| |||||| || || |||||||||| || ||||| | |||||||||| Sbjct 1079 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAAACCCCGCTTC 1020 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 || |||||||| | |||||||| || || || |||||||| ||||| Sbjct 1019 TTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTC 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618380406641280