Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3675 149 7e-31 >seq3675 Length=4586 Score = 149 bits (164), Expect = 7e-31 Identities = 1108/1753 (63%), Gaps = 63/1753 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| |||||||||| |||||||||| || | ||||| || | Sbjct 708 CCCGCAGCACATGCTCATGCGCGTTTCCATCGGTATCCACAAAGCGGACATCGAGCGAGC 767 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||| | | | ||| |||| |||||| || || ||||||| Sbjct 768 GATCGAGACCTACAACTTGATGAGCAACATGTAC-TTCACTCACGCCACGCCGACCCTCT 826 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || ||| | || || | || |||||| | | ||| ||||| | Sbjct 827 TCAACGCCGGGACCCCACGCCCGCAGCTCGCCTCGTGCTTCTTGCTGACCATGAAGGACG 886 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG-TGCGCAAATCTCA--AAGTGGG 104456 || ||| | || ||||| | || ||| | ||| ||||| ||| |||| | Sbjct 887 ACAGCATCGAAGGGATCTACGACAC-CTT--GAAGTCCTGCGCCTGCATCAGCAAGTACG 943 Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC-AATAAATCTCGTATTCGGGGG 104515 | ||||| || || | |||||| | | | || || | || |||||||| Sbjct 944 CCGGGGGCATCGGTCTATCCATCCACGGCATTCGCTCCCAAGGCAGCTAC-ATTCGGGGC 1002 Query 104516 ACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || ||| | | || | || || || || ||||| ||||| || |||| ||| || || Sbjct 1003 ACCAACGGTTCCAGCA-ACGGCATCATCCCCATGCTGCGCGTCTTCAACGACACCGCACG 1061 Query 104575 CTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || || | |||| || | || ||||| || |||| | || |||||||| || Sbjct 1062 GTACGTCGACCAAGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATGTACCTTGAGCCGTG 1121 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 ||||||||| | | |||||| | || ||| ||||| ||||||||| | || || Sbjct 1122 GCACGCGGACGTTTTTGAGTTCTTGGATTTGAAGAAAAACCACGGTGACGAGAACGCCCG 1181 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-G 104750 |||||| || |||| ||| | ||||| ||||| || ||||||||| | || || Sbjct 1182 CGCCCGCGACCTGTTCTACGCGATGTGGATCCCAGACCTTTTCATGAAGCGCGTACAGTC 1241 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 || ||| | ||| | | || ||||| || ||| | | || ||| || || Sbjct 1242 CGACGGGC-AGTGGACCTTGTTCTGTCCCAACGTGGCCCGTAACCTGCACGAAACCTGGG 1300 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | |||||||| ||| || | ||| | |||||||||| ||| || | | ||| Sbjct 1301 GCGAGGAGTTCGAAACCTTGTACGCCAAGTACGAGGCAGAGGGCAAAGGGTTCAAGACCA 1360 Query 104871 TGCCAGCTGCCGATGTGTGG---AAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | | || || ||||| ||| || || | |||| || || || |||| Sbjct 1361 TCCGCGCCCAGGAATTGTGGTTCAAA---ATCCTTGAAAGTCAAGTAGAAACCGGAACAC 1417 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | |||||||| ||||| ||| | || |||| || || || || | || ||||| | Sbjct 1418 CGTACATGCTCTACAAGGACTCTTGCAACCGCAAAAGCAACCAGCAAAACTTGGGAACTA 1477 Query 104988 TCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 | || |||| || | || || || ||| | | | || | | || |||| | Sbjct 1478 TTAAATCGAGT---AACTTGTGCACGGAGATCATCCAGTACACTGCCCCGGACGAGATTG 1534 Query 105045 CTGTGTGTAACCTCGCATCAATC-GCTCTCCCCAAGTATGTGGA-TCCAGAGAC--AAAG 105100 | || || ||| | || || ||| ||| | || |||| ||||| |||| | | ||| Sbjct 1535 CCGTTTGCAACTTGGCGTCCATCTGCT-TGCCAAAGTTCGTGGACACCAGCGGCGACAAG 1593 Query 105101 ACATTTGATTATGAAAA---ACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 || | | | | || ||| ||| ||| ||||| || ||| ||| | ||| Sbjct 1594 CCAGTGTACAACCACAAGGCACTGTTCGATGTTGTTAAAACCGTGACCGTCAACTTGAAC 1653 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 105217 | || || || || | ||||| || ||| ||||| | || |||||| | ||| Sbjct 1654 CGTGTCATCGACGTCAACTACTACCCAGTGGAGGAGGCTCGCTACTCCAATATGCGCCAC 1713 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA 105277 || |||||||| || || || || || || || || | |||||| | ||| || Sbjct 1714 CGCCCAATTGGGCTGGGCGTCCAAGGGCTTGCCGACGCGTTCATTTTGATGCGCTTTCCA 1773 Query 105278 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCC 105337 || || ||| || || || | || | ||||| || |||||||| |||| Sbjct 1774 TTCGAAAGCGAAGAGGCCCGACAATTGAACAAGGAGATATTCGAAACCATGTACTTCGCC 1833 Query 105338 GCTCTTGAGGCGAGTTCAGAGTTGGCAGA--GGTTGATGGTCCATATGAAACCTTTGAGG 105395 || | ||| || ||| ||| || | || || | || || |||| | Sbjct 1834 GCGATGACCGCGTCTTGCGAGGAGGCCGAACGCTT--CGGACACTACGAGACCTACCCAG 1891 Query 105396 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTT 105454 | | ||||| || |||| | | ||| || |||| |||| || | |||| | Sbjct 1892 GCTGTCCAGTCTCCAAAGGCATCTTCCAACCGGACATGT-GGAACGTTACCCCAACGGAC 1950 Query 105455 CACTACGACTG---GGAAGCTC---TCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 105508 | | ||||| |||| || ||| | ||| || || | || | || ||| Sbjct 1951 CGATGGGACTGGGCGGAACTTCGCGCCAATG-TCGC--CA---AGCACGGCGTACGCAAC 2004 Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 105568 | ||| | || |||||||| || ||||| ||| ||||||| |||| || || ||| Sbjct 2005 TCGTTGCTCGTCGCGCCAATGCCGACGGCCTCGACCTCACAAATTATGGGAAACAACGAA 2064 Query 105569 TGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTG 105628 ||||| ||||| |||||||| ||||| || ||| | || || ||||||||| | Sbjct 2065 TGCTTCGAACCATACACGACCAACATGTACAACAGACGTGTGCTTGCAGGAGAGTTTACG 2124 Query 105629 ATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTC-TCTGG--TCCAAGGAT 105685 ||||||||||| | || |||| | | | | ||| | ||||| ||||| | Sbjct 2125 TGCGTCAACAAGCACTTGTTGCGTGACTTGATCGCG-TTGAACATCTGGACCCCAAGCGT 2183 Query 105686 ATG-AAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAA 105744 | || | |||| | | || || || ||||||| || || |||| || Sbjct 2184 GCGCAACCAGATCATTG---CCGATGGAGGATCTGTTCAAAACGTTAAGGGCCTTCCCAA 2240 Query 105745 TGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACAT 105804 | || | ||||| || || |||||||||| ||| | || || ||| Sbjct 2241 GCAGTACAAAGATCTGTACAAGACCGTCTGGGAAATCAGCCAAAAGACTATCCTTACCAT 2300 Query 105805 GGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAG 105864 ||||||||| |||||| ||||| || |||||||||||| |||| | ||| | Sbjct 2301 GGCCGCAGACCGTGGTGCATTCATCGACCAAAGTCAAAGTTTGAACGTGCACATCGCCGC 2360 Query 105865 TCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAAC 105924 || | | ||| | | || |||||| | ||| |||||||||||||| ||||| Sbjct 2361 CCCCTCCACCGGAAAGTTGACCTCAATGCACTTTTACGCCTGGAAGAAGGGTCTTAAAAC 2420 Query 105925 GGGGATGTATTAC 105937 || ||||| ||| Sbjct 2421 CGGTATGTACTAC 2433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583209123093120