Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6476 91.5 4e-13 seq185 84.2 7e-11 >seq6476 Length=33399 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 266967 CCAGTAATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATT 267026 ||||| || || ||||||||||| ||||| |||||||||||||| || |||| | | | Sbjct 15515 CCAGTCATTGGGGATAAATTTTCAAGTCGGCACGGACAAAAAGGCACTGTTGGAATGCTG 15574 Query 267027 ATTCCTGAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAAT 267086 | ||||| ||||||| | | || ||||| ||| ||| || || ||||| || Sbjct 15575 TACCAACAAGAAGATATGCCCTATGATATCGATGGTATTGTACCGGACATAATTATAAAC 15634 Query 267087 CCTCATGCTATTCCTAGTCGTATGACAATTGGTCAATT 267124 || ||||| || || |||||||| ||||| || || Sbjct 15635 CCCCATGCGATCCCGTCGCGTATGACCATTGGGCATTT 15672 >seq185 Length=14135 Score = 84.2 bits (92), Expect = 7e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 266925 GGTTATAATTTTGCAAAAGTTCGTCTAAG-AACATTACGCCAACCAGTAA-TCGGCGATA 266982 ||||| || ||||||||||| || || | ||||| | | | || | || |||| || | Sbjct 10828 GGTTACAAGTTTGCAAAAGTGCGAATACGTAACATCAGG--ATCCCGCAAGTCGGGGACA 10885 Query 266983 AATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCTGAAGAAAATA 267042 | ||| | ||| | ||||| ||||| |||||||| || | | | |||| | | Sbjct 10886 AGTTTGCCAGTAGGCACGGGCAAAAGGGTACCATGGGAATGGCGTATGGGCAAGAGGACA 10945 Query 267043 TGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTCCTA 267102 |||| || | | || || ||| || || |||||| | || || ||||| ||||||| Sbjct 10946 TGCCTTTCACACAGGACGGTATTGTTCCAGACATTATTGTGAACCCCCATGCCATTCCTA 11005 Query 267103 GTCGTATGACAATTGGTCAATT 267124 |||||||||| ||||| || || Sbjct 11006 GTCGTATGACGATTGGGCACTT 11027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515116792171664