Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3675 228 9e-55 seq498 120 3e-22 >seq3675 Length=4586 Score = 228 bits (252), Expect = 9e-55 Identities = 531/787 (67%), Gaps = 24/787 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 |||||||||| || | ||||||||| | ||| | ||| | ||||| ||| Sbjct 722 TCATGCGCGTTTCCATCGGTATCCACAAAGCGGACATCGAGCGAGCGATCGAGACCTACA 781 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| |||||| | | |||||| || ||||||||||| ||||| |||||||| || || Sbjct 782 ACTTGATGAGCAACATGTACTTCACTCACGCCACGCCGACCCTCTTCAACGCCGGGACCC 841 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 | ||| ||| | | |||||| || || | |||||||| ||| ||||| || | Sbjct 842 CACGCCCGCAGCTCGCCTCGTGCTTCTTGCTGACCATGAAGGACGACAGCATCGAAGGGA 901 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT--AT 53430 ||||||| || | ||| || ||| |||| ||||| | || || |||||| || Sbjct 902 TCTACGACACCTTGAAGTCCTGCGCCTGCATCAGCAAGTACGCCGGGGGCATCGGTCTAT 961 Query 53431 CCACTGCTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACGGCGTCGCCG 53489 ||| | | || || | | || |||| | || || ||| || ||||| | | Sbjct 962 CCA-TCCACGGCATTCGCTCCCAA-GGCAGCTACATTCG-GGGCACCAACGGTTCCAGCA 1018 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||| |||||||||||| |||| || ||||||||| |||| || | Sbjct 1019 ACGGCATCATCCCCATGCTGCGCGTCTTCAACGACACCGCACGGTACGTCGACCAAGGCG 1078 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | || ||||||||||| ||||||||||| ||||| |||||||||||||| ||| || | | Sbjct 1079 GAGGCAAGCGCAAGGGCTCGTTCGCCATGTACCTTGAGCCGTGGCACGCGGACGTTTTTG 1138 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-T 53668 |||| | || || || || |||||||| | ||| ||| |||||||| | Sbjct 1139 AGTTCTTGGATTTGAAGAAAAACCACGGTGACGAGAACGCCCGCGCCCGCGACCTGTTCT 1198 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || || ||||||| || ||||| |||||| | || || |||| | ||||| | Sbjct 1199 AC-GCGATGTGGATCCCAGACCTTTTCATGAAGCGCGTACAGTCCGACGGGCAGTGGACC 1257 Query 53729 CTGATGTGCCCGAACGAGTGCCCCG--GCCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || | || || ||| ||| |||| ||| || | || || |||||||| || Sbjct 1258 TTGTTCTGTCCCAAC--GTGGCCCGTAACCTGCACGAAACCTGGGGCGAGGAGTT---CG 1312 Query 53787 AGA---TGTATCGGACGTACGCAGTTCAGGGC---CGCTACAAGAAGAAGGTCAAGGCGC 53840 | | |||| | ||||| | ||||| | | ||||| | || || | Sbjct 1313 AAACCTTGTACGCCAAGTACGAGGCAGAGGGCAAAGGGTTCAAGACCA---TCCGCGCCC 1369 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||||| | || || || || || ||||| ||||||||| || Sbjct 1370 AGGAATTGTGGTTCAAAATCCTTGAAAGTCAAGTAGAAACCGGAACACCGTACATGCTCT 1429 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCA 53960 ||||||| || |||| || ||||||||| | ||| | || || |||||||| | Sbjct 1430 ACAAGGACTCTTGCAACCGCAAAAGCAACCAGCAAAACTTGGGAACTATTAAATCGAGTA 1489 Query 53961 ACTTATG 53967 |||| || Sbjct 1490 ACTTGTG 1496 Score = 127 bits (140), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 17/469 (4%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| |||||||||| ||||||| ||||||||||| || || ||||| | || || ||| Sbjct 1993 GGCGTACGCAACTCGTTGCTCGTCGCGCCAATGCCGACGGCCTCGACCTCACAAATTATG 2052 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || |||||||| ||||| || |||||||||||||| ||| | || || ||| Sbjct 2053 GGAAACAACGAATGCTTCGAACCATACACGACCAACATGTACAACAGACGTGTGCTTGCA 2112 Query 55598 GGTGAGTTTGTCATGA-TCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 || |||||| | || ||||||||||| | | ||| || | | |||| || Sbjct 2113 GGAGAGTTTA-CGTGCGTCAACAAGCACTTGTTGCGTGACTTGATCGCGTTGAACATCTG 2171 Query 55657 GAACCC--GC-AGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCT 55710 || ||| || | ||| | ||| | ||| | | || || || || || || | Sbjct 2172 GACCCCAAGCGTGCGCAA-CCAGATCAT-TGCCG-ATGGAGGATCTGTTCAAAACGTTAA 2228 Query 55711 GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 || |||| || ||| || | ||| ||| || ||||| || || |||| Sbjct 2229 GGGCCTTCCCAAGCAGTACAAAGATCTGTACAAGACCGTCTGGGAAATCAGCCAAAAGAC 2288 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACC--AGTCCCAGTCTCTGAAC 55828 | | || |||| || || |||||||| | |||||||| |||| || | ||||| Sbjct 2289 TATCCTTACCATGGCCGCAGACCGTGGTGCATTCATCGACCAAAGTCAAAG--TTTGAAC 2346 Query 55829 ATCTTCAT-GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 | ||| | | ||| ||| || ||||||| ||| ||||||||||||| ||||| Sbjct 2347 GTGCACATCGCCGCCCCCTCCACCGG-AAAGTTGACCTCAATGCACTTTTACGCCTGGAA 2405 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCC 55936 |||||| || || || ||||||||||| |||| || || |||||||| Sbjct 2406 GAAGGGTCTTAAAACCGGTATGTACTACTTGCGCACTCGTCCCAAGGCC 2454 >seq498 Length=572 Score = 120 bits (132), Expect = 3e-22 Identities = 287/429 (67%), Gaps = 4/429 (1%) Strand=Plus/Minus Query 53275 TACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTG 53334 ||| ||||| | || || ||||||||| ||| | ||| || | || | | ||| Sbjct 461 TACTCACGCATCCCCCACGCTGTTCAACAGTGGAATGAAACAGCACCAACTTGCATCCTG 402 Query 53335 CTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTG 53394 ||| || || ||||||| || ||||| || ||| || ||||| ||||| |||||| Sbjct 401 CTTTCTCATGTCGATGAAAGAAGACTCCATTACCGGGATATACGATACGCTAAAGGAGGT 342 Query 53395 TGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAA 53454 ||| | || ||| | | ||||||||||| ||| || || ||||| || || || Sbjct 341 TGCACTAATAAGCAAAAGTGCTGGTGGTATCGGAATCGACGTGTCCAACGTTCGCGCAAA 282 Query 53455 CGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGT 53514 || | |||||| || |||||||| | | || | || |||||| | || || Sbjct 281 GGGTTCGTTAATCAAAGGAACGAACGGTACAAGCAACGGTTTGGTCCCTATGTTGCGTGT 222 Query 53515 CTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGC 53574 ||||| ||||| || || || || | ||||| || || || ||||| || ||||| Sbjct 221 ATTCAATAACACCGCACGCTATGTTGATCAGGGAGGCAACAAACGGAAGGGCTCCTTCGC 162 Query 53575 CATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA 53634 | | ||| | || || |||||| || || ||| | || | | ||||| || Sbjct 161 CGTTTACATTGAACCATGGCACAAAGATGTTCAGGACGTACTAAAATTAAAACTGAACCA 102 Query 53635 GGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTC 53692 |||| |||||| || ||| | ||||| || ||| || |||||||| || ||| | Sbjct 101 TGGTGTCGAAGAAGAACG-TGCAAGGGACCTATTCTAC-GCCCTGTGGATGCCTGACTTG 44 Query 53693 TTCATGCAA 53701 |||||| || Sbjct 43 TTCATGAAA 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547167516662400