Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3675 255 7e-63 seq6148 123 3e-23 seq2749 118 1e-21 seq4042 93.3 5e-14 seq6558 89.7 6e-13 seq229 84.2 2e-11 >seq3675 Length=4586 Score = 255 bits (282), Expect = 7e-63 Identities = 973/1499 (65%), Gaps = 69/1499 (5%) Strand=Plus/Minus Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 |||| ||| || ||||| || || || ||||||||||| | || || | || Sbjct 2093 TACATGTTGGTCGTGTATGGTTCGAAGCATTCGTTGTTTCCCATAATTTGTGAGGTCGAG 2034 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCG 80502 ||||||||||| || |||| | || || || || | ||||||||| || || || Sbjct 2033 GCCGTCGGCATTGGCGCGACGAGCAACGAGTTGCGTACGCCGTGCTTGGCGACATTGGCG 1974 Query 80503 CGCAAATCTGACCAAAAATCAACC--CCAACGCTGTGACC--CCACATGTCGTGCTGCAA 80558 || | || | ||| || | || | || || ||||||||| | || || Sbjct 1973 CGAAGTTCCGCCCAGTCC-CATCGGTCCGTTGGGGTAACGTTCCACATGTCCGGTTGGAA 1915 Query 80559 GATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTC-CGTCTTGGCCA 80617 |||||| | || | ||| | || | | | |||||||| | || ||| | |||| Sbjct 1914 GATGCCTTTGGAGACTGGACAGCCTGGGTAGGTCTCGTAGTGTCCGAAGCGT-TCGGCCT 1856 Query 80618 GCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACAC 80677 ||| || ||| | | | || ||| || ||| || || | ||||||||| Sbjct 1855 CCTCGCAAGACGCGGTCATCGCGGCGAAGTACATGGTTTCGAATATCTCCTTGTTCAATT 1796 Query 80678 CGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737 || |||| | | ||||| | |||| ||||| |||||| |||| || || || | Sbjct 1795 GTCGGGCCTCTTCGCTTTCGAATGGAAAGCGCATCAAAATGAACGCGTCGGCAAGCCCTT 1736 Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGG 80796 | ||||| | | || |||||||||||| | || || | || | ||||| | |||| Sbjct 1735 GGACGCCCAGCCCAATTGGGCGGTGGCGCATATTGGAGTAGCGAG-CCTCCTCCACTGGG 1677 Query 80797 TAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCAT-G 80855 || |||| |||||||| ||||||| |||| || || | ||||| ||| | Sbjct 1676 TAGTAGTTGACGTCGATGACACGGTTCAAGTTGACGGTCACGGT---TTTAACAACATCG 1620 Query 80856 AA--GT---TTCTGAAAGTCGAATTGGTT----CCCCTT-----CACAAATGCCGGAAGG 80901 || || || || || | | | || || || ||| || || | | Sbjct 1619 AACAGTGCCTTGTGGTTGTACACTGGCTTGTCGCCGCTGGTGTCCACGAACTTTGGCAAG 1560 Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCC 80961 | | |||||||| ||||| ||||| | ||| || | | || ||| || ||| ||| Sbjct 1559 CAGATGGACGCCAAGTTGCAAACGGCAATCTCGTCCGGGGCAGTGTACTGGATGATCTCC 1500 Query 80962 GTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAA 81021 |||||||| ||| || ||||| || |||| ||||| |||||| ||| ||||||| Sbjct 1499 GTGCACAAGTTACTCGATTTAATAGTTCCCAAGTTTTGCTGGTTGCTTTTGCGGTTGCAA 1440 Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG--AGGATGGCGT 81079 | |||||||||| ||||||||| || ||||| || || || |||| ||||| | Sbjct 1439 GAGTCCTTGTAGAGCATGTACGGTGTTCCGGTTTCTACTTG--ACTTTCAAGGATTTTGA 1382 Query 81080 CCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT 81139 ||| | || | || || |||| |||||| || ||| | |||||||||| Sbjct 1381 ACCACAATTCCTGGGCGCGGATGGTCTTGAACCCTTTGCCCTCTGCCTCGTACTTGGCGT 1322 Query 81140 A--AGCTTCGTCGAACT--TGGCACCGTGAAGTTCAGTG-AGGTCTGGGCACTCGTTAGG 81194 | || || ||||||| | || || | ||| ||| |||| || | |||| || Sbjct 1321 ACAAGGTT--TCGAACTCCTCGCCCC---AGGTTTCGTGCAGGTTACGGGCCACGTTGGG 1267 Query 81195 GCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCA 81254 || | || | ||| | |||| || ||| |||||||||| ||| |||||||| Sbjct 1266 ACAGAACAAGGTCCACTGCCCGTCGGACTGTACGCGCTTCATGAAAAGGTCTGGGATCCA 1207 Query 81255 GAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTC 81314 | ||| ||||||||||||| ||| || | ||| ||||| ||||| ||| || Sbjct 1206 CATCGCGTAGAACAGGTCGCGGGCGCGGGCGTTCTCGTCACCGTGGTTTTTCTTCAAATC 1147 Query 81315 GAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG 81374 | || || | | |||||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 1146 CAAGAACTCAAAAACGTCCGCGTGCCACGGCTCAAGGTACATGGCGAACGAGCCCTTGCG 1087 Query 81375 ---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431 | || || |||| |||||| || || || |||| || || |||| ||| ||||| Sbjct 1086 CTTGCCTCCGCCTTGGTCGACGTACCGTGCGGTGTCGTTGAAGACGCGCAGCATGGGGAT 1027 Query 81432 GATACCATCTGACTG--ACCGTTCGTACCCACGATACGCGACCCCTT-GGCGCGCA--CC 81486 ||| || | || ||| |||||| || ||| ||| | |||| || ||| | || Sbjct 1026 GATGCCGT-TG-CTGGAACCGTTGGTGCCC-CGAATGTAGCTGCCTTGGGAGCGAATGCC 970 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546 || ||| || ||||||||||| || | |||| || || || |||| | Sbjct 969 GTG--GATGGATAGACCGATGCCCCCGGCGTACTTGCTGATGCAGGCGCAGGACTTCAAG 912 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606 || || || || || |||||||| || | |||||| |||||||| || | | | Sbjct 911 GTGTCGTAGATCCCTTCGATGCTGTCGTCCTTCATGGTCAGCAAGAAGCACGAGGCGAGC 852 Query 81607 TGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666 || |||| | | ||||| ||||| || || || || |||||| |||| || ||| Sbjct 851 TGCGGGCGTGGGGTCCCGGCGTTGAAGAGGGTCGGCGTGGCGTGAGTGAAGTACATGTTG 792 Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCT 81726 ||||| || ||||| || | | || || || | ||| |||||||| | Sbjct 791 CTCATCAAGTTGTAGGTCTCGATCGCTCGCTCGATGTCCGCTTTGTGGATACCGATGGAA 732 Query 81727 ACACGCATAAACATGTACTG-GGGCG--------TCTCGCCTGCGTTC------AGGTAC 81771 || ||||| | ||||| ||| ||||| ||| ||| | || ||||| Sbjct 731 ACGCGCATGAGCATGTGCTGCGGGCGCTCGACGATCTGGCCGTTGATCTTCAAAAGGTAG 672 Query 81772 ATCTTCTGCAAAGTCTTGATGCCGAAGTAACCGAACCCGTAGTCGCGTTCGCTGTCGAT 81830 | ||| ||| || |||| |||||||| || ||||| ||||||| | | |||||| Sbjct 671 GCCCTCTCCAAGGTTTTGAACCCGAAGTAGTCGTACCCGAAGTCGCGCTTGTAGTCGAT 613 >seq6148 Length=2258 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| ||||| || || || ||||| || || || || || || Sbjct 1344 ATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCAAGT 1285 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| || || ||||||||||| || || || || || || Sbjct 1284 GACACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGATCAA 1225 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || || ||| | || |||| || ||| | ||||| || Sbjct 1224 CAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGACTACAAC 1165 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||| |||| ||||| | || | |||||||| |||||| Sbjct 1164 ATCCAAAAGGAAGCCACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGA 1117 >seq2749 Length=6745 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| | ||||| ||||| |||||| | | || ||| | | || | || Sbjct 5050 TTCGTCAAGACATTGACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACACGATC 5109 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 || | |||| ||||| |||||||| || || || || || ||||| ||||| || Sbjct 5110 ATGAACGTCAAGGGAAAAATCCAGGACAAAGAAGGTATCCCGCCTGACCAACAGCGACTG 5169 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 ||||| || || ||||| || || |||| ||||| | | || || || |||||||| Sbjct 5170 ATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCCAAAAG 5229 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGAC 27634 || ||||| | || ||||||||||| || || ||||||| Sbjct 5230 GATTCCACCTTGCACCTAGTCTTGCGCCTCCGTGGTGGAC 5269 >seq4042 Length=4160 Score = 93.3 bits (102), Expect = 5e-14 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 ||||| ||||| |||| |||| || |||| ||||| ||||| || || | | || Sbjct 2403 CAAATGTTTGTAGAGAC--TTACGGG-AAGAGGATTACCCTTGACGTCGAACCGAGCGAC 2459 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | || | || ||||| | || ||||||||||| || ||||| || || || ||| Sbjct 2460 ACGATCGAGAACGTGAAGCAAATGATCCAGGACAAGGAAGGCATTCCCCCGGATCAACAG 2519 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 ||||| || ||||| || ||||| || || || | ||| ||| | | ||||| || || Sbjct 2520 CGTCTTATCTTTGCCGGGAAGCAGCTGGAAGACGGTCGAACCTTGGGCGACTACAACATC 2579 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || |||| | |||| ||| | || || || |||||| Sbjct 2580 CAGAAAGAGGCCACGTTGAATCTTGTCCTTCGACTCCGTGGTGGA 2624 >seq6558 Length=25225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || ||||| ||||| | || || ||| | Sbjct 2527 ATGCAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACGTCGAGCCCTCG 2586 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || |||||||||||||| || || || || ||||| Sbjct 2587 GACACCATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAAGGGATCCCCCCCGACCAA 2646 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | |||||||| || || || | ||||| | || || || | ||||| || Sbjct 2647 CAACGGTTGATTTTTGCGGGGAAACAGTTGGAGGACGGCCGAACGCTCTCCGACTACAAC 2706 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||| || || || ||| | || || || || || Sbjct 2707 ATTCAGAAGGAGGCCACCCTCCACCTCGTCCTTCGCCTCCGGGGGGG 2753 >seq229 Length=1895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || ||||| || || ||||| || ||||| ||||| |||||| | || || ||| | | Sbjct 682 ATACAAATTTTCGTAAAGACCCTGACCGGTAAGACGATTACTTTGGACGTGGAGCCGAGC 741 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || ||||||||||| || || | | | ||| | Sbjct 742 GACACGATCGTGAACGTCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGACAAA 801 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || |||||||| || || || | || | ||| ||| ||||| || Sbjct 802 CAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGGCGAAACCTGAGC-GACTACAA 860 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||| |||| || ||||| | | || ||||| || || Sbjct 861 CGTTCAGAAAGAAGCCACGCTGCATCTGCTACTCCGCCTTCGGGGAGG 908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570259870498560