Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6558 143 2e-29 seq1992 143 2e-29 seq6148 131 1e-25 seq2749 122 8e-23 seq229 104 2e-17 seq4042 102 7e-17 >seq6558 Length=25225 Score = 143 bits (158), Expect = 2e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| ||||| |||| || ||| | ||||| | || || || || | Sbjct 2525 CCATGCAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACGTCGAGCCCT 2584 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | ||||||| ||||| ||||| ||||| ||||| ||||| || || ||||| | Sbjct 2585 CGGACACCATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAAGGGATCCCCCCCGACC 2644 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTAC 27164 |||| || || || | || || ||||| ||||| ||| | ||| || | ||||| ||| Sbjct 2645 AACAACGGTTGATTTTTGCGGGGAAACAGTTGGAGGAC-GGCCGAACGCTCTCCGACTAC 2703 Query 27165 AACATTCAAAAGGAGTCGACC 27185 |||||||| |||||| | ||| Sbjct 2704 AACATTCAGAAGGAGGCCACC 2724 >seq1992 Length=1353 Score = 143 bits (158), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || || ||||| ||| | || || | || || || || | Sbjct 1083 CCATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCCCT 1024 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| ||||||||| || || ||||| ||||||||||| |||||||| || ||||||| Sbjct 1023 CGGACACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGATC 964 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 ||||||| || || | || || ||||| ||||||||| | || | || ||||||| Sbjct 963 AACAGCGGTTGATTTTTGCGGGGAAACAGTTGGAAGACGGCCGCACGCTGTCGGATTACA 904 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGT--TTTGCGTTTGCGGGG 27211 | || || || ||| | || || || ||||| || || || |||||| Sbjct 903 ATATACAGAAAGAGGCCACGTTGCACTTGGTGCTTCGCCTTCGCGGGG 856 >seq6148 Length=2258 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||||| || || || | ||||| || || |||||||| Sbjct 1344 ATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCAAGT 1285 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| || || ||||| ||||| || || || |||||| Sbjct 1284 GACACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGATCAA 1225 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| |||||||||||||| | ||| | || |||||| Sbjct 1224 CAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGACTACAAC 1165 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| | ||| | || |||||| | ||| | || ||||| Sbjct 1164 ATCCAAAAGGAAGCCACCCTTCACTTGGTTCTTCGTCTTCGTGGTGG 1118 >seq2749 Length=6745 Score = 122 bits (134), Expect = 8e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26995 TATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGA 27054 |||| || || || ||||||| ||| | |||||| | | ||||| || |||| ||| Sbjct 5048 TATTCGTCAAGACATTGACCGGTAAGACGATTACTTTGTACGTGGAGCCTAGCGACACGA 5107 Query 27055 TTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTT 27114 | || ||||| |||||| || ||||||||||| || || || || |||||||| Sbjct 5108 TCATGAACGTCAAGGGAAAAATCCAGGACAAAGAAGGTATCCCGCCTGACCAACAGCGAC 5167 Query 27115 TAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAA 27174 | || | ||||||||| || ||||||| | || | |||||||||||||| |||| Sbjct 5168 TGATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAACATCCAAA 5227 Query 27175 AGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| || ||||| || | || ||||| | || ||||| Sbjct 5228 AGGATTCCACCTTGCACCTAGTCTTGCGCCTCCGTGGTGG 5267 >seq229 Length=1895 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||| || || || ||||| || |||||||| ||| | |||||| | || ||||| ||| Sbjct 681 CATACAAATTTTCGTAAAGACCCTGACCGGTAAGACGATTACTTTGGACGTGGAGCCGAG 740 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| | || ||||| | ||| ||||| ||||||||||| | | || ||| | Sbjct 741 CGACACGATCGTGAACGTCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGACAA 800 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 |||||| | || | |||||| || || |||||||| Sbjct 801 ACAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAAGAC 837 >seq4042 Length=4160 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 ||||| ||||| || |||||| |||| |||| |||| || || |||| || || ||| Sbjct 2433 ATTACCCTTGACGTCGAACCGAGCGACACGATCGAGAACGTGAAGCAAATGATCCAGGAC 2492 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || |||||||| || || |||||||||||| | || | ||||| || || |||||||| Sbjct 2493 AAGGAAGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGGAAGCAGCTGGAAGAC 2552 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 || ||| | ||| |||||||| || || ||| | || || Sbjct 2553 GGTCGAACCTTGGGCGACTACAACATCCAGAAAGAGGCCACGTT 2596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434879866229760