Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6148 179 9e-40 seq4042 154 3e-32 seq6558 134 3e-26 seq2749 122 2e-22 seq1992 116 9e-21 seq3901 107 4e-18 seq1888 107 4e-18 seq229 96.9 8e-15 >seq6148 Length=2258 Score = 179 bits (198), Expect = 9e-40 Identities = 177/226 (78%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| |||| || ||||||||||| || || | ||| || Sbjct 1123 ACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAA-GG 1181 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||||| || || || ||||||||||| |||||||| ||||| || | | Sbjct 1182 TGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATAC 1241 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||||||||||||||||||| || |||||||||||||||||| ||| || |||| Sbjct 1242 CTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGA 1301 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | || || || || ||||| ||||||||||| || | ||||| || Sbjct 1302 GGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq4042 Length=4160 Score = 154 bits (170), Expect = 3e-32 Identities = 167/218 (77%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| |||||||| | | |||| |||||| |||||||| || || | | ||| Sbjct 2618 ACGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGT 2559 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || || |||||||| || ||||| || || |||| || Sbjct 2558 TCGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCC 2499 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069 |||||||||||||||| |||| |||||||| ||||| ||||| ||| ||| || || Sbjct 2498 TTCCTTGTCCTGGATCATTTGCTTCACGTTCTCGATCGTGTC---GCTCGGTTCGACGTC 2442 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACA 211107 || || ||| || ||||||| ||||| |||||||| Sbjct 2441 AAGGGTAATCCTC-TTCCCGT--AAGTCTCTACAAACA 2407 >seq6558 Length=25225 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||| ||| || || ||||| || || | || || | || || Sbjct 2738 AGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCC 2679 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || || || | ||||||||||| || || | |||||||||||| Sbjct 2678 TCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCC 2619 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || ||||| || |||||||| ||| || || || | || |||||| Sbjct 2618 TGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTC 2559 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | || || ||||| | |||||| Sbjct 2558 TTCCCCGTCAACGTTTTCACAAATATCTGCAT 2527 >seq2749 Length=6745 Score = 122 bits (134), Expect = 2e-22 Identities = 150/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| ||||| | ||||| || ||||||||||| ||||| | | || | |||||||| Sbjct 5250 GACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCATCTTC 5191 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 |||||||||||| ||||| || || || ||||||||||| || | ||||| |||||||| Sbjct 5190 CAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTCCTG 5131 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGT 211081 ||| ||| || ||||| ||| ||||| ||| || || | | ||| ||||| Sbjct 5130 GATTTTTCCCTTGACGTTCATGATCGTGTC---GCTAGGCTCCACGTACAAAGTAATCGT 5074 Query 211082 CTTTCCCGTGAGAGTCTTTACAAA 211105 ||| || || | ||||| || || Sbjct 5073 CTTACCGGTCAATGTCTTGACGAA 5050 >seq1992 Length=1353 Score = 116 bits (128), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| | |||| |||||| || || || ||||||| || || Sbjct 861 CGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTG 920 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| ||| || || || || || | || ||||| || ||||| | ||| Sbjct 921 CGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCT 980 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || |||||||| ||||| || || || ||||| ||| || || || | Sbjct 981 TCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAG 1040 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTATGG 211121 || || ||||| || || || ||||| || || | ||||| |||||| Sbjct 1041 GTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCATGGTTATGG 1089 >seq3901 Length=887 Score = 107 bits (118), Expect = 4e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 210924 TCTTTTTGGATGTTATAATCC--GCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGA 210981 ||||| |||||||| || || ||| ||||| ||| |||||||| ||| || || | Sbjct 494 TCTTTCTGGATGTTGTAGTCACTGCA--GGTCCGGCCACCTTCCAGCACCTTCCCAGCAA 551 Query 210982 AGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGT 211041 ||| ||| | ||||| || || || | ||||||||||||||||||||||| |||| | Sbjct 552 AGAAAAGACACTGTTGATCGGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTCATGG 611 Query 211042 TTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTA 211101 | || || |||||| |||| | || || || || ||||| || || | | ||| | Sbjct 612 TCTCAATAGTGTCACTCGGTTCAGCATCAAGGGTAATTGTCTTACCAGTCAAACCCTTCA 671 Query 211102 CAAACACCTGCATTTTATGGTT 211123 | || | |||||| | ||||| Sbjct 672 CGAAAATCTGCATGATGTGGTT 693 >seq1888 Length=501 Score = 107 bits (118), Expect = 4e-18 Identities = 109/141 (77%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039 ||||||||| || ||||| ||||| || | ||||||||||||||||||||||| || || Sbjct 1 GAAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGAC 60 Query 211040 GTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||| |||||||| ||| ||| || || ||||| ||||| || || ||||| | || Sbjct 61 GTTCTCGATGGTATCA---CTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGT 117 Query 211097 CTTTACAAACACCTGCATTTT 211117 ||||| || | ||||| || Sbjct 118 TTTTACGAAAATTTGCATATT 138 >seq229 Length=1895 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 || || || |||| ||||| || | ||| || || ||| | | || ||||||||| Sbjct 887 AGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAGC 828 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || |||||||| || || |||| ||| | | ||||| |||||||| ||| Sbjct 827 TGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGTACCTTCTTTGTCCTGAATC 768 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTT 211085 ||| | || ||||| |||| ||||| ||| || || || | ||| |||||||| Sbjct 767 TTTCGCTTGACGTTCACGATCGTGTC---GCTCGGCTCCACGTCCAAAGTAATCGTCTTA 711 Query 211086 CCCGTGAGAGTCTTTACAAA 211105 || || || |||||||| || Sbjct 710 CCGGTCAGGGTCTTTACGAA 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159046731611120