Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1992 120 2e-22 seq2749 98.7 7e-16 seq4042 95.1 8e-15 >seq1992 Length=1353 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || || || || || || | || || || || || Sbjct 1081 ATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCCCTCG 1022 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| ||| ||||| ||||| | || || |||||| Sbjct 1021 GACACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAA 962 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| || ||||| ||||||||| ||||| | |||||||| Sbjct 961 CAGCGGTTGATTTTTGCGGGGAAACAGTTGGAAGACGGCCGCACGCTGTCGGATTACAAT 902 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| |||||| |||| || || || || Sbjct 901 ATACAGAAAGAGGCCACGTTGCACTTGGT 873 >seq2749 Length=6745 Score = 98.7 bits (108), Expect = 7e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| | ||||| || |||||||| | || || |||||||| || |||||| Sbjct 5134 GACAAAGAAGGTATCCCGCCTGACCAACAGCGACTGATTTTCGCCGGCAAGCAGCTGGAA 5193 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || | || ||||| |||||||||||| ||||| || ||||| || || |||| || Sbjct 5194 GATGGCCGTACTTTGTCCGATTACAACATCCAAAAGGATTCCACCTTGCACCTAGTCTT 5252 >seq4042 Length=4160 Score = 95.1 bits (104), Expect = 8e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || |||||||||||| | || |||||||| || || |||||| Sbjct 2490 GACAAGGAAGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGGAAGCAGCTGGAA 2549 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 |||| || || || ||||| |||||||| || |||||| |||| || Sbjct 2550 GACGGTCGAACCTTGGGCGACTACAACATCCAGAAAGAGGCCACGTT 2596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337980401040704