Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6148 154 4e-32 seq4042 145 2e-29 seq6558 143 6e-29 seq1992 125 2e-23 seq1888 114 3e-20 seq3901 102 2e-16 >seq6148 Length=2258 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || |||| ||| ||||||| ||||| || ||| || Sbjct 1123 ACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGT 1182 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || ||||||||||| |||||||| || || || ||||| Sbjct 1183 GCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACC 1242 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||||||||| || |||||||||||| | |||||| || | Sbjct 1243 TTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAG 1302 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || ||||| | ||| |||| ||| | |||||| || Sbjct 1303 GGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq4042 Length=4160 Score = 145 bits (160), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| |||||||| | | |||| ||||| |||| ||||| ||| |||| || Sbjct 2618 ACGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGT 2559 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| ||||||||||| || |||||||| || ||||| || || ||||| || Sbjct 2558 TCGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCC 2499 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||| |||||||||| ||||| ||||| | ||| ||||| | Sbjct 2498 TTCCTTGTCCTGGATCATTTGCTTCACGTTCTCGATCGTGTCGCTCGGTTCGACGTCAAG 2439 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTG 225710 || ||| |||| ||||| |||| | || |||| ||| Sbjct 2438 GGTAATCCTCTT-CCCGT--AAGTCTCTACAAACATTTG 2403 >seq6558 Length=25225 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| |||| || || || | ||||| |||| | |||| || || Sbjct 2738 AGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCC 2679 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| ||||| || || || | |||||||||||||| || || ||||||||||| Sbjct 2678 TCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCC 2619 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||| || || |||||||| |||| || ||||| || || |||||| Sbjct 2618 TGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTC 2559 Query 225682 TTGCCCGTCAAAGTTTT 225698 || |||||||| ||||| Sbjct 2558 TTCCCCGTCAACGTTTT 2542 >seq1992 Length=1353 Score = 125 bits (138), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| | |||| ||||| || | ||||||||| | || || Sbjct 861 CGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGACAGCGTG 920 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | ||| ||||| || || || | || ||||| ||||| || || ||| Sbjct 921 CGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGGATGCCT 980 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||||||||||||| || || ||||| |||| || || || || Sbjct 981 TCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACATCCAAG 1040 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT-TTTATGG 225720 || || ||||| || || | || || | ||| | |||||| |||||| Sbjct 1041 GTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCATGGTTATGG 1089 >seq1888 Length=501 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225579 GAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||||||| || ||||| || || || |||||||||||||| |||||||||||||| || Sbjct 1 GAAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGAC 60 Query 225639 AGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| || | ||||| || | |||||| || || |||||||| ||||| Sbjct 61 GTTCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTT 120 Query 225699 TATGAACACTTGCATTTT 225716 || ||| | |||||| || Sbjct 121 TACGAAAATTTGCATATT 138 >seq3901 Length=887 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225522 TTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAA 225581 |||||| |||| ||||| || | || | ||| |||| ||| ||||||||| || Sbjct 493 TTCTTTCTGGATGTTGTAGTCACTGCAGGTCCGGCCACCTTCCAGCACCTTCCCAGCAAA 552 Query 225582 GATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGC 225641 || ||| | ||||| ||||| || |||||||||||||| |||||||||||||||| | Sbjct 553 GAAAAGACACTGTTGATCGGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTCATGGT 612 Query 225642 TTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTAT 225701 || || ||||| | ||| | || | || || ||||| || |||||| || | Sbjct 613 CTCAATAGTGTCACTCGGTTCAGCATCAAGGGTAATTGTCTTACCAGTCAAACCCTTCAC 672 Query 225702 GAACACTTGCATTTTATGGTT 225722 ||| | ||||| | ||||| Sbjct 673 GAAAATCTGCATGATGTGGTT 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192422900279072