Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3919 165 7e-36 >seq3919 Length=4506 Score = 165 bits (182), Expect = 7e-36 Identities = 554/846 (65%), Gaps = 21/846 (2%) Strand=Plus/Minus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||| ||||| || || ||||| || || |||| | ||| || ||||||| ||||||| Sbjct 1380 TACCCGCTTCTCAAAAAAATTGGTCTTTCCTTGCAGCGATATCATTTCCATCCAATCAAA 1321 Query 4331 CGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTA 4389 |||||| ||||||||||| || |||| || | || || || | ||||||||| || Sbjct 1320 CGGATTGGTTGCGTTGTACATCTTTTCAACCCCCAAG-GCCACCAACAATCGGTCTGCGC 1262 Query 4390 CAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449 | || || || | || ||| | | | || || || || ||| ||| || | | Sbjct 1261 AGTACTCGATGTATTCGCACATCAAGGTGGAATTCATCCCTATCAATTCCACGGGCAATG 1202 Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 | | | || || ||| ||| || || || | ||| ||||| | || | Sbjct 1201 CTTTGGACACGAAAACTTTTTCGATGTCCACAGCGTTCCCGATGATATCGTGAATGCGTT 1142 Query 4510 CTTTAGATGGTTTATTTACTAAGTA-TCCAA--ACAATAAACACGCAAAATCACAATGCA 4566 || || ||||||||| |||| ||| ||| || ||||| |||||||| |||| Sbjct 1141 GTTGAGGGAGTTTATTTATCAAGTGGTCCTTGTACAGCAAGCACGCGAAATCACAGTGCA 1082 Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 | || ||||| | ||| || || ||||| || || || |||||||| ||||| | || Sbjct 1081 AGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCATCAAACCCCGCT 1022 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | ||| || | || ||| ||||| |||||||| ||||| || ||||| | Sbjct 1021 TCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTCGCACGCGGCGA 962 Query 4687 ACGCTACTAA----TCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGC- 4741 | ||||| | |||| | ||| || | || | | || ||||| || || Sbjct 961 AAGCTACAACCCTTTCGGCAAACGA-CGCATT---TTCGGCGTTGGTCCATCG-AAGGCA 907 Query 4742 CCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT--ATAGCGTTAAATAATTTACTT 4799 ||| | || |||| || || | | ||| ||| || || || | || || Sbjct 906 CCAATCGGCCTTTTGGCGGAC-CATGTCAATGT-TATCGATGGCATTCAGCAACCTATCC 849 Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||||| | | || ||| || ||||| || || || || | ||| | || || Sbjct 848 TTTTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAGAGAGTATACTTCTGCGTGGATG 789 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 ||||| || || ||||| || ||||| ||||| || || || | | ||| |||||||| Sbjct 788 TTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCTCCGGCAGTTGGACTTCGTTC 729 Query 4920 CAAAATCTT-TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 | || | || || | ||| |||||||| || |||||| |||||| ||||| |||| Sbjct 728 GAGAAGTTCATCAAC-AGGTTCTCGTTTACAATGCCGTCAGAGGCTGCGAAAAAGGCCAG 670 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 || | || ||| || |||||| | | | ||| | ||||| |||| Sbjct 669 GACGTTGCTGATGAAGAACCGTTCGTTGTCCGTCATTTTATCCCAGTCTTTACTGTCTTG 610 Query 5039 AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCA 5098 | || || | ||||| ||||||| ||||| ||||| |||||||||||||| ||| Sbjct 609 TGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGAGGCTTCAGCTTTTTTGTACATTTGCCA 550 Query 5099 AATATC 5104 |||||| Sbjct 549 AATATC 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427012709320304