Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3919 123 4e-23 >seq3919 Length=4506 Score = 123 bits (136), Expect = 4e-23 Identities = 583/912 (64%), Gaps = 22/912 (2%) Strand=Plus/Minus Query 46344 GTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 46403 ||| |||||||| || ||||| |||||||| || || |||| || ||||| ||||||| Sbjct 1389 GTACTCACCTACCCGCTTCTCAAAAAAATTGGTCTTTCCTTGCAGCGATATCATTTCCAT 1330 Query 46404 AAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCT 46463 ||||||||||||| || | || || || |||| || || || | | || || Sbjct 1329 CCAATCAAACGGATTGGTTGCGTTGTACATCTTTTCAACCCCCAAGGCCACCAACAATCG 1270 Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||||| | | || || || ||||| ||||||| ||||| | || || Sbjct 1269 GTCTGCGCAGTACTCGATGTATTCGCACATCAAGGTGGAATTCATCCCTATCAATTCCAC 1210 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCAT--CCGATATTATCGAT 46581 || | || | | | || ||| ||| || ||||| | ||||| ||||| Sbjct 1209 GGGCAATGCTTTGGACACGAAAACTTTTTCGATGTCCACAGCGTTCCCGATGATATCG-- 1152 Query 46582 GTTACTGT-TTCCTCACTTGGTGGATGCATCAAATGTT---TAAACATTAAACATGCAAA 46637 | | || || | | || || ||||| || | | ||| || || || || Sbjct 1151 -TGAATGCGTTGTTGAGGGAGTTTATTTATCAAGTGGTCCTTGTACAGCAAGCACGCGAA 1093 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 |||||| || | ||| || || | || || | ||||| || || | || ||||| Sbjct 1092 ATCACAGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCACAAGCCGGGCAT 1033 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 | || ||||| || | ||| || | || || || || |||||||| ||||| || Sbjct 1032 CAAACCCCGCTTCTTTAACCAGAACACGGCACAAAACGACCCGGAAAAGAAGATGCCCTC 973 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCATCATTATGAATCCACCTT 46815 || ||||| || |||| | || || | || | |||| | | || | Sbjct 972 GCACGCGGCGAAAGCTACAA--CCCTTTCGGCAAACGACGCATTTTCGGCGTTGGTCCAT 915 Query 46816 TGA--GC-CCAATCAGCCTTTTTCTTTACACAAGGCATTGTT-TCTATAGCATTAAAGAG 46871 || || |||||| ||||||| || || | || |||| || || ||||| | | Sbjct 914 CGAAGGCACCAATCGGCCTTTTGGCGGAC-CATGTCAATGTTATCGATGGCATTCAGCAA 856 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 | ||||| | | || ||||| || || || || | |||| || | ||||| Sbjct 855 CCTATCCTTTTCTTTTCCATTTTTAATGTACGTGTCAATAAGAAGAGAGTATACTTCTGC 796 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 || ||||||||||| || ||||| || ||||| || || ||||| || | | || || Sbjct 795 GTGGATGTTTTCAATGGCTATCTGGAACCCGTAGAAGCACCTTGCCTCCGGCAGTTGGAC 736 Query 46992 CTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049 || || | | | ||||| ||| ||||| || || || || ||| || || ||| Sbjct 735 TTC-GTTCGAGA-AGTTCATCAACAGGTTCTCGTTTACAATGCCGTCAGAGGCTGCGAAA 678 Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTG 47109 || |||| || | | || || | ||| | | |||| ||||| |||||| || Sbjct 677 AAGGCCAGGACGTTGCTGATGAAGAACCGTTCGTTGTCCGTCATTTTATCCCAGTCTTTA 618 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 | |||| || | || | ||||| || |||||||| || || || |||||||| ||| Sbjct 617 CTGTCTTGTGCCAAGTCCAGCTCTTCCGCAGTCCAGAACGAGGCTTCAGCTTTTTTGTAC 558 Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCA 47229 || | ||| ||||| | |||||||| || | ||| |||| || || |||| | Sbjct 557 ATTTGCCAAATATCGTTGTGCTGGATCGGGAACAAAACGAATCGTTTCGGGTTTTCCGTC 498 Query 47230 AGTATAGGTTCC 47241 || || |||||| Sbjct 497 AGAATTGGTTCC 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712871234012160