Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6148 104 5e-17 seq4042 91.5 3e-13 seq2749 87.8 4e-12 >seq6148 Length=2258 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || | || |||||||||||||| || || || | |||||||| | Sbjct 1138 CAAG-TGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCATCTTCCA 1196 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| |||||||||||||| | || || || | | ||| |||||||| || || | Sbjct 1197 ATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGA 1256 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | ||||| ||||| | || | | |||| ||| || || || || ||||| |||| Sbjct 1257 TCTTTTGCTTGACGTTTTCGATGGTGTC---ACTTGGTTCCACATCGAGGGTAATGGTTT 1313 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| |||||||| ||||| | ||||| || Sbjct 1314 TACCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq4042 Length=4160 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||||||| | || | |||||| ||||||||||| ||| | || |||| Sbjct 2615 GAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCGCCCAAGGTTCG 2556 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || |||||||| |||||||| | ||| || |||| | || ||||| Sbjct 2555 ACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCTTC 2496 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTC 152035 ||| || || || |||| || || |||| Sbjct 2495 CTTGTCCTGGATCATTTGCTTCACGTTCTC 2466 >seq2749 Length=6745 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| || || | || || || ||||||||||||||||||| ||||| | |||||||| Sbjct 5250 GACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCATCTTC 5191 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || |||||||| || || | ||| ||||| | || ||| ||||| || || || Sbjct 5190 CAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTCCTG 5131 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||||| || | |||| | ||| || | | |||||| || || Sbjct 5130 GATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAATCGTCTT 5071 Query 152075 GCCCGTGAGAGTCTTCACGAA 152095 || || | ||||| ||||| Sbjct 5070 ACCGGTCAATGTCTTGACGAA 5050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153716015764048