Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1992 95.1 1e-14 seq6148 86.0 5e-12 seq6558 82.4 6e-11 >seq1992 Length=1353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| ||||| || | ||||| || ||||| ||| |||| || ||| Sbjct 1081 ATGCAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCCCTCG 1022 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| ||| ||||| |||||| | || ||||||| Sbjct 1021 GACACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAA 962 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | |||| |||||| ||||| |||||||| || || | ||||| ||| Sbjct 961 CAGCGGTTGATTTTTGCGGGGAAACAGTTGGAAGACGGCCGCACGCTGTCGGATTACAAT 902 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||| | || | || || ||| | || || ||||| || Sbjct 901 ATACAGAAAGAGGCCACGTTGCACTTGGTGCTTCGCCTTCGCGGGGG 855 >seq6148 Length=2258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||||||||| || || || | || || |||||||||||| | || |||||| Sbjct 1347 AAGATGCAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCA 1288 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || | | | | || || ||||| || ||||| ||||| | ||| ||| Sbjct 1287 AGTGACACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGAT 1228 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | ||||| | || || ||||||||||||||| || || || || Sbjct 1227 CAACAACGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCACCTTGAGTGACTAC 1168 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||| | || || || || || | ||||| || ||||| Sbjct 1167 AACATCCAAAAGGAAGCCACCCTTCACTTGGTTCTTCGTCTTCGTGGTGG 1118 >seq6558 Length=25225 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||||||||| || || || |||||| |||| || ||| Sbjct 2527 ATGCAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACGTCGAGCCCTCG 2586 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| ||| ||||| ||||| | ||| ||| ||| Sbjct 2587 GACACCATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAAGGGATCCCCCCCGACCAA 2646 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA 111254 ||| || | |||| |||||| ||||| ||||| || Sbjct 2647 CAACGGTTGATTTTTGCGGGGAAACAGTTGGAGGA 2681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421774761839488