Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6148 178 3e-39 seq6558 158 3e-33 seq4042 136 8e-27 seq2749 136 8e-27 seq1992 134 3e-26 seq3901 116 8e-21 seq229 104 5e-17 seq4697 102 2e-16 seq1888 91.5 3e-13 >seq6148 Length=2258 Score = 178 bits (196), Expect = 3e-39 Identities = 185/240 (77%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA-GC 282931 |||||||| || ||||| |||| || | ||| ||| |||||||||||||||||| | Sbjct 1118 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTC 1177 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||||||||| || | |||||| ||||| ||||| | ||||||||| ||| || Sbjct 1178 AAG-GTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGG 1236 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||| ||||||||| || ||| | ||||| ||||| | ||| || Sbjct 1237 GATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCAC 1296 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAA 283111 ||||| || || || |||||||| | |||||| ||||| || ||||| || |||| || Sbjct 1297 ATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTTGTTATAAAA 1356 >seq6558 Length=25225 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || |||||||| || || || | ||| || || || ||||||||||| | Sbjct 2753 CCCCCCCGGAGGCGAAGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAG 2694 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| ||||| | |||||||| ||||| ||||| ||||||||||| || Sbjct 2693 AGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGG 2634 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || |||||| || ||| | || || |||||||| | ||||| Sbjct 2633 ATCCCTTCCTTGTCCTGAATCTTTTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACG 2574 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || |||||||| |||||||| || || || ||||||||||| Sbjct 2573 TCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACAAATATCTGCAT 2527 >seq4042 Length=4160 Score = 136 bits (150), Expect = 8e-27 Identities = 168/225 (75%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || |||| |||||| ||||| |||||||||||||| | Sbjct 2623 CCACCACGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTCGCCC 2564 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || || || || || |||||||||||||| | ||| ||||| || ||| Sbjct 2563 AAGGTTCGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCCGGGGGA 2504 Query 282993 ATACCCTCCTTGTCTTGGATC-TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||| ||||| || ||| | ||||| ||||| | |||||| Sbjct 2503 ATGCCTTCCTTGTCCTGGATCATTTGC-TTCACGTTCTCGATCGTGTCGCTCGGTTCGAC 2445 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 || || || ||| |||| ||||| |||||| || || || || Sbjct 2444 GTCAAGGGTAATCCTCTT-CCCGT--AAGTCTCTACAAACATTTG 2403 >seq2749 Length=6745 Score = 136 bits (150), Expect = 8e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| | || || || || ||| || |||||||||||||| || | Sbjct 5267 CCACCACGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGAC 5208 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || |||||||| || || || || ||||| || |||| || ||||||||| ||| Sbjct 5207 AAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGG 5148 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || ||||| ||||| ||| | || ||| | ||| ||||| || || || Sbjct 5147 ATACCTTCTTTGTCCTGGATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCACG 5088 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 | | ||| ||||||||||| ||||| ||||| ||||||| Sbjct 5087 TACAAAGTAATCGTCTTACCGGTCAATGTCTTGACGAATA 5048 >seq1992 Length=1353 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || |||||||| |||| || |||||| ||||| || || ||||| || | Sbjct 855 CCCCCGCGAAGGCGAAGCACCAAGTGCAACGTGGCCTCTTTCTGTATATTGTAATCCGAC 914 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || | |||||||| ||||| ||||| || ||||| || || Sbjct 915 AGCGTGCGGCCGTCTTCCAACTGTTTCCCCGCAAAAATCAACCGCTGTTGATCGGGAGGG 974 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| |||||| || || | || || |||||||| | ||||| Sbjct 975 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCACATTCTCAATCGTGTCCGAGGGCTCGACA 1034 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 1035 TCCAAGGTTATGGTCTTCCCGGTAAGGGTCTTGACGAAAATTTGCAT 1081 >seq3901 Length=887 Score = 116 bits (128), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA--GCAAGCGTGC 282939 ||| ||||| | || || || |||||||| ||||||||||||||| ||| || | Sbjct 467 AGGGGAAGTCTTAAATCCAATGTACTTTCTTTCTGGATGTTGTAGTCACTGCA--GGTCC 524 Query 282940 GGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCT 282999 ||||| | || || ||||| ||||||| | || ||||| || || ||||| | Sbjct 525 GGCCACCTTCCAGCACCTTCCCAGCAAAGAAAAGACACTGTTGATCGGGGGGGATACCTT 584 Query 283000 CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 ||||||| ||||||||| || | ||| || |||||||| | ||| | || || | Sbjct 585 CCTTGTCCTGGATCTTTTGCTTCATGGTCTCAATAGTGTCACTCGGTTCAGCATCAAGGG 644 Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || |||||||| |||||| ||| ||||| |||||||| Sbjct 645 TAATTGTCTTACCAGTCAAACCCTTCACGAAAATCTGCAT 684 >seq229 Length=1895 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| |||| |||||| | |||| |||||| || | ||||||||| Sbjct 908 CCTCCCCGAAGGCGGAGTAGCAGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTC 849 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || | || || || || || || || ||||| ||||||| || |||| ||| | Sbjct 848 AGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGG 789 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||| || ||||| || |||||| || ||| | |||| ||||| | || || Sbjct 788 GTACCTTCTTTGTCCTGAATCTTTCGCTTGACGTTCACGATCGTGTCGCTCGGCTCCACG 729 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| ||||||||||| |||| ||||| ||||| || || || Sbjct 728 TCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTACGAAAATTTGTAT 682 >seq4697 Length=791 Score = 102 bits (112), Expect = 2e-16 Identities = 288/438 (66%), Gaps = 6/438 (1%) Strand=Plus/Plus Query 273623 CCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATA 273682 ||| ||||| ||||| ||| | || ||||||| ||| | || || || ||| || Sbjct 183 CCATCCGGTACCAATTCCGCTTGCCCCGTTCACCAAAATCATTGGAATGATCGGGCAGTA 242 Query 273683 ATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGT 273742 || || || ||||| | | |||||||||| || || ||||||| || || || || Sbjct 243 GTAATCCGGTTCAATGGAAACTCCATCGTCGTCCAGATAGTTCAACAGGGCGTCGTC-GT 301 Query 273743 ATCAACGAAA-ACCTTTCGCGTCTGA--GGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 | |||| || || | | ||| || || ||| ||||||||||| ||| Sbjct 302 CTGGGTGAAAGACAAGACGAGCAAGCTCGGA--CAATTGGGTGTGAATGTACCTGGGACT 359 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTT 273859 || || || || ||||| | | | |||||||| || | || ||| ||| Sbjct 360 GGCCGCATCGTTCCCCCCTTGGAATCGAGTTCCAAACTGCCCACCTGGGTAAAGCATGTT 419 Query 273860 TATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATAC 273919 ||||| ||||| || ||||| ||| ||||| ||||| ||||| | || | Sbjct 420 CATGTTATTGCTTCCAACGTACGTCTGGGCCATGCCAACGATCGTCCCGTTCAGACTGGC 479 Query 273920 CTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCAC 273979 |||||||||||||||||| |||||||| | | || || || ||| ||||| | Sbjct 480 TTCGCCGTGGTGATAGGCGGCGTGTTCGGAGGTGTACCCTGCGAGCTGGGCAACACGGAT 539 Query 273980 ATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAA 274039 ||| | |||||||||||| || || | |||| || || | ||| ||| ||||| Sbjct 540 TTCGTGCACCAAGTTTCGCTTCAACGCAGCGAACAATACTTTTCTCTGGGAGTTTTTGAA 599 Query 274040 CCCATCAACGACCGATGG 274057 || || || || || || Sbjct 600 GCCGTCCACCACGGACGG 617 >seq1888 Length=501 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 ||||| | ||| ||||| ||| || ||||| |||||||| ||||||||| || ||| Sbjct 2 AAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGACG 61 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | ||||| || || | || || ||||| ||||| || ||||||||||| || || Sbjct 62 TTCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTTT 121 Query 283086 ACGAATATCTGCATTTTCAT 283105 ||||| || ||||| || || Sbjct 122 ACGAAAATTTGCATATTGAT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046644140379552