Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6558 127 1e-24 seq6148 114 9e-21 seq4042 105 5e-18 seq229 104 2e-17 seq2749 87.8 1e-12 seq3901 82.4 5e-11 >seq6558 Length=25225 Score = 127 bits (140), Expect = 1e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| || |||||||| |||| ||| || |||| ||| Sbjct 2735 ACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCC 2676 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| ||||| ||||| ||||| || || || || | || | |||||||| ||| Sbjct 2675 AACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGGATCCCTTCCTTGTCCTGA 2616 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | |||| | |||||||| | || || || |||| ||||||||||| Sbjct 2615 ATCTTTTGCTTGAC-GTTCTCAATGGTGTCCGAGGGCTCGACGTCCAAGGTAATCGTCTT 2557 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATGAA 44349 ||||| | || ||||| || || |||||| | |||| ||| Sbjct 2556 CCCCGTCAACGTTTTCACAAATATCTGCATGGTTTGAAAGAA 2515 >seq6148 Length=2258 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 |||| |||||| ||| ||||||||||||||||| || | || | ||| | || || Sbjct 1136 ACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTCACTCAAGGT-GCGGCCATCTTC 1194 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || ||||| ||||| | ||| || ||||| | || | ||||||||| ||| Sbjct 1195 CAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGGGGGGATACCTTCCTTGTCCTG 1254 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | || | |||||||| | |||||| || | ||||| || || Sbjct 1255 GATCTTTTGCTTGACGTTTTCGATGGTGTCACTTGGTTCCACATCGAGGGTAATGGTTTT 1314 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || ||||| ||||| |||||||| Sbjct 1315 ACCCGTAAGAGTCTTTACGAAAATTTGCAT 1344 >seq4042 Length=4160 Score = 105 bits (116), Expect = 5e-18 Identities = 166/231 (72%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||| | || || | | |||| ||| || ||||||||||| || Sbjct 2627 CATTCCACCACGGAGTCGAAGGACAAGATTCAACGTGGCCTCTTTCTGGATGTTGTAGTC 2568 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | | | ||| || |||| ||||||||||||||||||||||| | |||||| ||||| Sbjct 2567 GCCCAAGGTT--CGACCGTCTTCCAGCTGCTTCCCGGCAAAGATAAGACGCTGTTGATCC 2510 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | |||||||| ||| ||| | |||||| | |||| | || |||||| | Sbjct 2509 GGGGGAATGCCTTCCTTGTCCTGGATCATTTGCTTC-ACGTTCTCGATCGTGTCGCTCGG 2451 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTG 44334 ||| || || | |||||| || ||||||| | |||| || || ||||| Sbjct 2450 TTCGACGTCAAGGGTAATCCTC-TTCCCGTAA--GTCTCTACAAACATTTG 2403 >seq229 Length=1895 Score = 104 bits (114), Expect = 2e-17 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 44131 CAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAG 44190 ||| || |||||| || || || | |||||| ||| || | ||| |||| ||||| Sbjct 888 CAGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCGCTCAGGTTTCGCCCGTCTTCCAG 829 Query 44191 CTGCTTCCCGGCAAAGATCAAACGCTGCTGATC-TGAAGGCACACCTTCCTTTTCCGTTA 44249 |||||| ||||| ||||||| ||||| | || || || |||||| || ||| | Sbjct 828 CTGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGTTGGGT-ACCTTCTTTGTCCTGAA 770 Query 44250 TCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||| |||| | |||| | || |||||| | ||||| |||| ||||||||||| Sbjct 769 TCTTTCGCTTGAC-GTTCACGATCGTGTCGCTCGGCTCCACGTCCAAAGTAATCGTCTTA 711 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||||||| ||||| ||||| ||| Sbjct 710 CCGGTCAGGGTCTTTACGAAAATTTGTATG 681 >seq2749 Length=6745 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| || ||||| | ||| |||||||||||||||||||||| | || | || Sbjct 5253 CAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGACAAAGTACGGCCATC 5194 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| ||||| || |||| ||||| || || | || | |||||| || || Sbjct 5193 TTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGGATACCTTCTTTGTC 5134 Query 44245 CGTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | || || | | | | |||| | || |||||| | ||||| | || ||||||| Sbjct 5133 CTGGAT-TTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCACGTACAAAGTAATCG 5075 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAA 44328 |||| || || | ||||| ||||| Sbjct 5074 TCTTACCGGTCAATGTCTTGACGAA 5050 >seq3901 Length=887 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||||| |||||| ||||||| | || ||| ||||| | || | ||||||||| ||| Sbjct 533 TCCAGCACCTTCCCAGCAAAGAAAAGACACTGTTGATCGGGGGGGATACCTTCCTTGTCC 592 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||||||| || | || ||||| | ||| | || | ||||| ||| Sbjct 593 TGGATCTTTTGCTTCATGGTCTCAATAGTGTCACTCGGTTCAGCATCAAGGGTAATTGTC 652 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 || || || | ||||||||| || ||||||||||| Sbjct 653 TTACCAGTCAAACCCTTCACGAAAATCTGCATGATGTG 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359959302229296