Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6148 168 2e-36 seq229 131 4e-25 seq2749 125 2e-23 seq6558 123 6e-23 seq1888 120 7e-22 seq4042 114 3e-20 seq1992 109 1e-18 >seq6148 Length=2258 Score = 168 bits (186), Expect = 2e-36 Identities = 165/209 (79%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || ||||| || |||||||| |||||| ||| Sbjct 1341 CAAATTTTCGTAAAGACTCTTACGGGTAAAACCATTACCCTCGATGTGGAACCAAGTGAC 1282 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| |||||||| ||||| ||||| || || || ||| Sbjct 1281 ACCATCGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGATCAACAA 1222 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||||||||||||||| | |||||||| | || |||| || || ||| | Sbjct 1221 CGTCTTATCTTCGCCGGAAAACAATTGGAAGATGGCCGCAC-CTTGAGTGACTACAACAT 1163 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||| ||| | || || || |||| || Sbjct 1162 CCAAAAGGAAGCCACCCTTCA-CTTGGTT 1135 >seq229 Length=1895 Score = 131 bits (144), Expect = 4e-25 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||||||||| || || || || || || ||||| || | || |||| ||| | | Sbjct 685 CAAATTTTCGTAAAGACCCTGACCGGTAAGACGATTACTTTGGACGTGG--AGCCGAGCG 742 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| |||| ||||||||| | ||||||||||||||||||||| | || | ||| | | Sbjct 743 ACACGATCGTGAACGTCAAGCGAAAGATTCAGGACAAAGAAGGTACCCAACACGACAAAC 802 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||||| ||||| || | | || ||| || |||| Sbjct 803 AGCGGCTGATCTTCGCCGGTAAGCAGCTGGAAGACGGGCGAAACCTGAGCGACTACAACG 862 Query 178102 TCCAAAAAGAATCAACACTGCATCT 178126 | || |||||| | || |||||||| Sbjct 863 TTCAGAAAGAAGCCACGCTGCATCT 887 >seq2749 Length=6745 Score = 125 bits (138), Expect = 2e-23 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||| ||||||||| ||| || |||||||||||||| ||||| || ||||| Sbjct 5101 GACACGATCATGAACGTCAAGGGAAAAATCCAGGACAAAGAAGGTATCCCGCCTGACCAA 5160 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||||| || |||||||| || ||||| |||||||| | ||| | ||||||| ||| Sbjct 5161 CAGCGACTGATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCCGATTACAAC 5220 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||||| || || || |||| || || ||| | ||| Sbjct 5221 ATCCAAAAGGATTCCACCTTGCACCTAGTCTTGCGCCTC 5259 >seq6558 Length=25225 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | || || || ||||| ||| | || || || ||| ||| Sbjct 2530 CAGATATTTGTGAAAACGTTGACGGGGAAGACGATTACCTTGGACGTCGAGCCCTCGGAC 2589 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||||||||||||||| ||||| ||||| || ||||| ||| Sbjct 2590 ACCATTGAGAACGTCAAGCAAAAGATTCAGGACAAGGAAGGGATCCCCCCCGACCAACAA 2649 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | || || || | || || |||| || ||| | Sbjct 2650 CGGTTGATTTTTGCGGGGAAACAGTTGGAGGACGGCCGAACGCTCTCCGACTACAACATT 2709 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || | || || || || || Sbjct 2710 CAGAAGGAGGCCACCCTCCACCTCGT 2735 >seq1888 Length=501 Score = 120 bits (132), Expect = 7e-22 Identities = 108/134 (81%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||||||||| ||||| | || || ||||| ||||| ||||| ||||| || || Sbjct 132 CAAATTTTCGTAAAAACGTTGACGGGTAAAACCATCACGCTCGATGTGGA--GCCAAGTG 75 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||||||||| |||||||| |||||||| ||||| ||||| || || || | Sbjct 74 ATACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCCCCTGATCAAC 15 Query 178042 AACGACTTATCTTC 178055 | || ||||||||| Sbjct 14 AGCGTCTTATCTTC 1 >seq4042 Length=4160 Score = 114 bits (126), Expect = 3e-20 Identities = 137/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || | ||| ||||| || || ||| ||| ||||| ||||||||||| || ||| Sbjct 2424 GGGAAGAGGATTACCCTTGACGTCGAACCGAGC---GACACGATCGAGAACGTGAAGCAA 2480 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 | ||| |||||||| ||||| || || ||||| || || || |||||||| ||||| || Sbjct 2481 ATGATCCAGGACAAGGAAGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGGAAG 2540 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || | || | | ||| || ||| |||| ||||| | || || || Sbjct 2541 CAGCTGGAAGACGGTCGAACCTTGGGCGACTACAACATCCAGAAAGAGGCCACGTTGAAT 2600 Query 178125 CTTGT 178129 ||||| Sbjct 2601 CTTGT 2605 >seq1992 Length=1353 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || || ||| | || || || ||| ||| Sbjct 1078 CAAATTTTCGTCAAGACCCTTACCGGGAAGACCATAACCTTGGATGTCGAGCCCTCGGAC 1019 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||||||||| ||||| ||||| |||||||| || || || Sbjct 1018 ACGATTGAGAATGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAG 959 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | ||||| || | || || | ||||| || | Sbjct 958 CGGTTGATTTTTGCGGGGAAACAGTTGGAAGACGGCCGCACGCTGTCGGATTACAATATA 899 Query 178104 CAAAAAGA 178111 || ||||| Sbjct 898 CAGAAAGA 891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203621883151072