Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 3_20[genbank_20GCA_5F900128585.1_202016-12-02] 7,088 sequences; 28,414,174 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq229 145 7e-30 seq2749 113 4e-20 seq6558 111 1e-19 seq6148 105 6e-18 seq1888 82.4 7e-11 >seq229 Length=1895 Score = 145 bits (160), Expect = 7e-30 Identities = 180/240 (75%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| || || || || | | ||||||||||||| || ||||||| ||| |||||| Sbjct 911 CCGCCTCCCCGAAGGCGGAGTAGCAGATGCAGCGTGGCTTCTTTCTGAACGTTGTAGTCG 852 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC--CG 41750 ||| | ||| |||| || |||||||| |||||||| ||||| ||||||| ||| Sbjct 851 CTCAGGTTTCGCCCGTCTTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGTTTGTCGTGT 792 Query 41751 CGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGAC 41809 ||| || || || |||||| || ||| |||| ||| || | |||||||||| | Sbjct 791 TGGGTAC-CT-TCTTTGTCCTGAATCTTTCGCTT-GACGTTCACGATCGTGTCGCTCGGC 735 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 ||||| |||| || ||||| ||||| ||||| |||||||||||||| || ||| |||| Sbjct 734 TCCACGTCCAAAGTAATCGTCTTACCGGTCAGGGTCTTTACGAAAATTTGTATGCCATCG 675 >seq2749 Length=6745 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || || || || |||| ||| ||||| || ||||| || ||||| Sbjct 5267 CCACCACGGAGGCGCAAGACTAGGTGCAAGGTGGAATCCTTTTGGATGTTGTAATCGGAC 5208 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 | || || | || || ||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 5207 AAAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCAGGCGGG 5148 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || || |||||| ||||||| ||| | | | |||||||| | |||||| Sbjct 5147 ATACCT-TCTTTGTCCTGGATTTTTCCCTTGACGTTCATGATCGTGTCGCTAGGCTCCAC 5089 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | || || ||||| ||||| |||| ||||| ||||| Sbjct 5088 GTACAAAGTAATCGTCTTACCGGTCAATGTCTTGACGAA 5050 >seq6558 Length=25225 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||||||| ||||||||| Sbjct 2753 CCCCCCCGGAGGCGAAGGACGAGGTGGAGGGTGGCCTCCTTCTGAATGTTGTAGTCGGAG 2694 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||| || || || || |||| || |||||||| | ||| Sbjct 2693 AGCGTTCGGCCGTCCTCCAACTGTTTCCCCGCAAAAATCAACCGTTGTTGGTCGGGGGGG 2634 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | ||||||||| || |||||||| |||| | || ||||| | ||| Sbjct 2633 ATCCCTTCCTTGTCCTGAATCTTTTGCTT----GACGTTCTCAATGGTGTCCGAGGGCTC 2578 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| || ||||| || ||||||| ||| || || || ||||||||| Sbjct 2577 GACGTCCAAGGTAATCGTCTTCCCCGTCAACGTTTTCACAAATATCTGCATG 2526 >seq6148 Length=2258 Score = 105 bits (116), Expect = 6e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | |||| || || ||| ||||| || ||||| ||||| Sbjct 1114 ACCTCCACCACGAAGACGAAGAACCAAGTGAAGGGTGGCTTCCTTTTGGATGTTGTAGTC 1173 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | |||||| | || || | || || |||||||| || || || ||||| || | Sbjct 1174 ACTCAAGGTGCGGCCATCTTCCAATTGTTTTCCGGCGAAGATAAGACGTTGTTGATCAGG 1233 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||| | | ||||||||| ||| |||||||| | || | | ||||| || | | Sbjct 1234 GGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTTTCGATGGTGTCACTTGGTT 1292 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || | || || ||||||||||| || |||||||||||||| ||||| || Sbjct 1293 CCACATCGAGGGTAATGGTTTTACCCGTAAGAGTCTTTACGAAAATTTGCATCTT 1347 >seq1888 Length=501 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 41728 GAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAA 41787 ||| || || |||||||| || | ||| | | ||||||||| ||| |||||||| | Sbjct 1 GAAGATAAGACGCTGTTGATCAGGGGGGATACCTTCCTTGTCCTGGATCTTTTGCTTGAC 60 Query 41788 CGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | || || || | |||||| || | ||| || ||||||||||||| ||| || Sbjct 61 GTTCTCGATGGTATCACTTGGCTCCACATCGAGCGTGATGGTTTTACCCGTCAACGTTTT 120 Query 41848 TACGAAAATCTGCATGTT 41865 ||||||||| ||||| || Sbjct 121 TACGAAAATTTGCATATT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462263039865600