Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5427 116 8e-21 seq3565 109 1e-18 seq274 109 1e-18 seq99 100 6e-16 seq5573 91.5 3e-13 seq1520 86.0 1e-11 seq1519 86.0 1e-11 seq786 86.0 1e-11 >seq5427 Length=1720 Score = 116 bits (128), Expect = 8e-21 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 74 GCCCGTCTAGCTCAGTCGGCAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGT 15 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14 CCCACGGTGGGC 3 >seq3565 Length=3152 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 61081 GAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAG 61140 || ||| |||||||||||| || ||| | ||||| |||||||||||||| || |||| || Sbjct 371 GATTTTATCAAGCATCAACTTCAGAATTATATGGTAAAGTTCAAGAAATACCACAAAAAG 312 Query 61141 AAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGA 61200 | | ||| || |||||||| ||| || |||| ||||||||||| || || || |||| Sbjct 311 AGACGACGCCATTTTATCCACGTTCTCCATATGCTGTTGCAAAACAATTTGCGTATTGGA 252 Query 61201 TTTGT 61205 | ||| Sbjct 251 TGTGT 247 >seq274 Length=12031 Score = 109 bits (120), Expect = 1e-18 Identities = 66/70 (94%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| Sbjct 2246 CCCGTCTAGCTCAGTTGGCAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGCC 2305 Query 165771 CCACGATGGG 165780 ||||| |||| Sbjct 2306 CCACGGTGGG 2315 Score = 109 bits (120), Expect = 1e-18 Identities = 66/70 (94%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| Sbjct 9786 CCCGTCTAGCTCAGTTGGCAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGCC 9727 Query 165771 CCACGATGGG 165780 ||||| |||| Sbjct 9726 CCACGGTGGG 9717 >seq99 Length=19583 Score = 100 bits (110), Expect = 6e-16 Identities = 184/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 281757 GCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAAC 281816 ||||||||||| ||||| ||||| ||| | | ||||| ||||| | || | || Sbjct 6687 GCACTCGCGTGATCTTTTCCACCAAGCAAACGTGTACCAAATTGACCACCTGGGTATAAT 6628 Query 281817 CAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGC 281876 | ||||| ||||| ||| || | | ||||||| | || || || || || | Sbjct 6627 AAATTAATATTATTCGACCCAACAAAGTTTTGAGCCATACTCACAATAGTTCCTTGTAAG 6568 Query 281877 GATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACC 281936 || || ||||| || ||||| || ||||| | ||||||||| || || || || Sbjct 6567 GAAACTTCACCATGATGATAAGCAGAATGTTCTGAGACATAACCAGCTAATTGAGCAACT 6508 Query 281937 TTCACGTCTGATGTCAAGTTGCGTTTGAAA-GCGCAATATAATACTTTTCGTTGAGAAGG 281995 || | ||| |||| || ||||| ||| |||| | || ||||||| ||||||||| Sbjct 6507 TTAATTTCTTTAGTCAGTTTACGTTTAAAACATGCAA-ACAAAACTTTTCTTTGAGAAGG 6449 Query 281996 CTTGAAACCATCAACGACAGACGGAAT 282022 ||||| ||||||| | | ||||||| Sbjct 6448 TTTGAATCCATCAATAATACACGGAAT 6422 Score = 100 bits (110), Expect = 6e-16 Identities = 184/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 281757 GCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAAC 281816 ||||||||||| ||||| ||||| ||| | | ||||| ||||| | || | || Sbjct 12874 GCACTCGCGTGATCTTTTCCACCAAGCAAACGTGTACCAAATTGACCACCTGGGTATAAT 12933 Query 281817 CAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGC 281876 | ||||| ||||| ||| || | | ||||||| | || || || || || | Sbjct 12934 AAATTAATATTATTCGACCCAACAAAGTTTTGAGCCATACTCACAATAGTTCCTTGTAAG 12993 Query 281877 GATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACC 281936 || || ||||| || ||||| || ||||| | ||||||||| || || || || Sbjct 12994 GAAACTTCACCATGATGATAAGCAGAATGTTCTGAGACATAACCAGCTAATTGAGCAACT 13053 Query 281937 TTCACGTCTGATGTCAAGTTGCGTTTGAAA-GCGCAATATAATACTTTTCGTTGAGAAGG 281995 || | ||| |||| || ||||| ||| |||| | || ||||||| ||||||||| Sbjct 13054 TTAATTTCTTTAGTCAGTTTACGTTTAAAACATGCAA-ACAAAACTTTTCTTTGAGAAGG 13112 Query 281996 CTTGAAACCATCAACGACAGACGGAAT 282022 ||||| ||||||| | | ||||||| Sbjct 13113 TTTGAATCCATCAATAATACACGGAAT 13139 >seq5573 Length=540 Score = 91.5 bits (100), Expect = 3e-13 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 53 GCCCGTCTAGCTCAGTCGGCAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 1 >seq1520 Length=7208 Score = 86.0 bits (94), Expect = 1e-11 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 165730 AGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 7207 AGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGTCCCACGGTGGGC 7156 >seq1519 Length=7226 Score = 86.0 bits (94), Expect = 1e-11 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 165730 AGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 7225 AGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGTCCCACGGTGGGC 7174 >seq786 Length=1240 Score = 86.0 bits (94), Expect = 1e-11 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 165730 AGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 2 AGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGTCCCACGGTGGGC 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057739481184680