Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq352 161 1e-34 >seq352 Length=10598 Score = 161 bits (178), Expect = 1e-34 Identities = 494/755 (65%), Gaps = 14/755 (2%) Strand=Plus/Plus Query 16679 TAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATG 16738 || || | ||| |||||||| |||||||| ||||| || | || ||| ||| | ||| Sbjct 6800 TACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCATC 6859 Query 16739 AAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTA 16798 | ||||| ||||| | | | | | |||| |||| || | | ||| | | | Sbjct 6860 CATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAAGACGA 6919 Query 16799 TCCGCTACA-AATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 || || ||| ||||| || ||||||||||||||| | |||||||| ||||| ||| Sbjct 6920 TCAGC-ACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCTAC 6978 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 || | ||| || | | ||||| | ||| | |||| ||| ||| || | Sbjct 6979 TGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCTGATACAATGATCTCGGT 7038 Query 16918 AACTCG---TTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 ||| || || | ||| | | ||| | ||| || ||| ||| |||||||| || || Sbjct 7039 AACACGAGATT--TTGGAAGTT-TATTTACAAGCTGGTTATACACGAGACATGCAAAGTC 7095 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 ||| ||||| || || || | || | ||| || || || || | || |||||| Sbjct 7096 GCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCAA 7155 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 |||||||| ||||||||||| || | || || ||||| ||||| || || || || Sbjct 7156 ACCTCGTTTTTTTAACCAAAAAATACTGCAAAATGAACCAGAGAAGAAAATTCCTTCTAC 7215 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTG 17154 | || ||||| | | |||||| || | | ||||| || || | |||||| | Sbjct 7216 AGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTTTGTCAGTCCATTGAAG 7275 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTC 17214 |||| | || || | || | |||| | ||||| || || || || || | | Sbjct 7276 AGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACAAGTGATT 7335 Query 17215 TTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT 17274 ||| || | || | || |||| || || || || |||| ||| || || || Sbjct 7336 TTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCGAATGAAT 7395 Query 17275 GTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA---CTTC 17331 ||| || || || || ||||| || ||||||||||| ||||| || ||| | |||| Sbjct 7396 GTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCATGTCTTC 7455 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || | | | | ||| || | |||||||| || || || || || || || || ||||| Sbjct 7456 CATG-AAATTGGTT--GCCAAGTTTTCGTTTACAATTCCATCACTTGCAGCAAAGAACGC 7512 Query 17392 CAATATATGCTTAATGAAATATTTTTCGTCCGGTG 17426 | || || |||||| | |||||||| || Sbjct 7513 GAGAATGTGAGAAATGAAGTGACGTTCGTCCGATG 7547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517505257320480