Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq352 212 6e-50 >seq352 Length=10598 Score = 212 bits (234), Expect = 6e-50 Identities = 565/850 (66%), Gaps = 14/850 (2%) Strand=Plus/Plus Query 15917 TAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATA 15976 || |||| ||| |||||||| || ||||| |||||||| | |||||| ||| | ||| Sbjct 6800 TACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCATC 6859 Query 15977 AAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT-CT 16035 | ||||| ||||| | | | | | ||| |||| || | ||| ||| | Sbjct 6860 CATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTG-GTAGATAAGACG 6918 Query 16036 ATCTGCTACA-AATTCTATATATTGACACATTAA-GTCGCAATTAATTCCTATAAGTCGT 16093 ||| || ||| ||||| || ||||| |||||||| || | |||| ||||| |||||| | Sbjct 6919 ATCAGC-ACAGAATTCAATGTATTGGCACATTAATGTAG-AATTCATTCCAATAAGTTCT 6976 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 || || | ||| | | | |||| | |||| |||| ||| | |||||| ||| Sbjct 6977 ACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCTGATACAATGATCTCG 7036 Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 || | || | || | || ||| || || ||| ||| ||||| || |||||| Sbjct 7037 GTAACACGAGATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCAAAGTCG 7096 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 || |||| ||||| || | || | ||| || || ||||| | |||||||| Sbjct 7097 CAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCAAA 7156 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAA-TGACCCCGAAAAGAATATACCCTCAAC 16332 |||||||| |||||||| || || | ||||| ||| || || ||||| || || || || Sbjct 7157 CCTCGTTTTTTTAACCAAAAAATA-CTGCAAAATGAACCAGAGAAGAAAATTCCTTCTAC 7215 Query 16333 AGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTG 16392 || || || || | | |||||| || | | || | || || | |||||| | Sbjct 7216 AGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTTTGTCAGTCCATTGAAG 7275 Query 16393 TACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTC 16452 ||||| | || || | ||| | ||| | ||||| || || || ||||| | | Sbjct 7276 AGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACAAGTGATT 7335 Query 16453 TTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTAT 16512 ||| || | || | || |||| ||||| || | | |||| ||| || || || Sbjct 7336 TTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCGAATGAAT 7395 Query 16513 GTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA---CTTC 16569 ||| || || || || ||||| ||||| |||||||| || || || ||| | |||| Sbjct 7396 GTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCATGTCTTC 7455 Query 16570 CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629 || | ||| | ||| |||| ||| || || || || || |||||||||||||| ||||| Sbjct 7456 CATG-AAATTGGTT--GCCAAGTTTTCGTTTACAATTCCATCACTTGCAGCAAAGAACGC 7512 Query 16630 CAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 | ||||| |||||| | |||||| |||| || | | | || || || Sbjct 7513 GAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGTCCCTTGTGTC 7572 Query 16690 TTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTT 16749 | | | || | ||||| | |||||||||| ||| | || || |||||||||| Sbjct 7573 ACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCTTATACATTTC 7632 Query 16750 CCAAATATCA 16759 |||||| ||| Sbjct 7633 CCAAATGTCA 7642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511374535247520