Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq352 224 1e-53 seq458 161 1e-34 >seq352 Length=10598 Score = 224 bits (248), Expect = 1e-53 Identities = 631/955 (66%), Gaps = 44/955 (5%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACAT---AACTCCCATTT 23844 ||||||||||| |||||||||||| || ||||| || | |||||| || Sbjct 6735 TTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCAGCAACTCCAACTCCAGCTT 6794 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || ||||| ||||||||||| ||||| || ||||| |||| ||| || ||| | Sbjct 6795 TAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGAT 6854 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 ||| | || ||||||| | |||||| | | | | | | || | | | || | Sbjct 6855 TCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAA 6914 Query 23965 ATCTATCTGCGACA-AACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 | ||| || ||| || || || ||| ||| | | | |||||||||| |||||| Sbjct 6915 GACGATCAGC-ACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGT 6973 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAAT------TCTTGTTCAATAG---AGACCGCG--- 24071 | ||||| | ||| || | | |||| ||||| |||| || | || | Sbjct 6974 TCTACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCTGATACAATGATC 7033 Query 24072 TCTGTTATAATAGATCTTACT-GTTTCTTCACTCGGTGGATACAATAAATGTTTAAACAT 24130 || || | | |||| || |||| || || | ||| ||| ||| Sbjct 7034 TCGGTAACACGAGATTTTGGAAGTTTATTTACAAGCTGG-------------TTATACAC 7080 Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 | |||||| || |||||||||| ||| || || | ||||||||| || || || || Sbjct 7081 GAGACATGCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGT 7140 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC-GCAAA-TGATCCAGAA 24248 |||||| ||||| | || || ||||| | |||||| || || ||||| ||| ||||| Sbjct 7141 GAGTCCTGGCATCAAACCTCGTTTTTTTAACCAAAAAAT--ACTGCAAAATGAACCAGAG 7198 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--CTGT 24306 ||||||||||||||||| || || || || | ||||| ||| || || ||| ||| Sbjct 7199 AAGAAAATTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGT 7258 Query 24307 CATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 ||| |||| | ||||||| | ||||||| ||| || ||||| | || || || Sbjct 7259 -TTGTCAGTCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGAT 7317 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 || || || | | ||||| || | || ||| | || ||||| | |||| Sbjct 7318 TGCGTTTAACAAGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGA 7377 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||||| ||||||||||||||||||||| || |||||||| || || || |||| || || Sbjct 7378 ATACACTTCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTC 7437 Query 24485 GGTAATCTGTACTTCTATACA--AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 | | || | ||| | || |||| | | ||| || ||||| || || ||||| ||| Sbjct 7438 AGCACATTGCATGTCT-TCCATGAAATTGGT-TGCCAAGTTTTCGTTTACAATTCCATCA 7495 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 || || ||||| ||||| | | || || || | |||||| | || ||||| Sbjct 7496 CTTGCAGCAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTT 7555 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | | || | | || | | | || | ||||| | |||||||| || ||||| Sbjct 7556 TCGTAGTCCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCA 7615 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| | ||| |||||| || |||||||| | |||||||| Sbjct 7616 GCTTTCTTATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 >seq458 Length=35501 Score = 161 bits (178), Expect = 1e-34 Identities = 364/543 (67%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || |||| ||| || | |||||||| |||||| | ||| |||||||| | | | Sbjct 30904 ACGCGTTCCATGAATAAATCAGGAACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCT 30845 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 || || || || ||||||||| || | ||||| | | ||||||| ||||||| ||| Sbjct 30844 TCTTCTTTACCATGATTCTTTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGT 30785 Query 54149 TCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 54208 || | || | | | | ||| ||||| ||| || ||||| | ||| | ||| Sbjct 30784 TCGAGATAAACAGCGAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCA 30725 Query 54209 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 54268 || | |||| |||||||||||||||| | || |||||| || | ||||||||| || Sbjct 30724 GTATCATTAAAAACTCTCAACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGA 30665 Query 54269 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTA 54328 |||||| | |||||||||| |||||| | ||| || || || || || Sbjct 30664 ATATAGGAGTTAGATCCACGAATATTGTGAATTGAAATACCAATACCACCAGCATACTTC 30605 Query 54329 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 54388 ||||| |||| || ||| | || ||||| || || || ||| || || |||| Sbjct 30604 GAGATGCATGCACAATTTTTAAGAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATA 30545 Query 54389 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 54448 | | ||||||||| |||||||| | || | ||| || |||||||||| ||| || Sbjct 30544 GTCATGAGAAAACAGGATGACATTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGT 30485 Query 54449 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT----GAGTC 54504 | || || || | ||| || | | | ||||| || | | || || | Sbjct 30484 GTTGCATGTGTGTAATGTTTAGTTGACATCATTTCATACGTTTCCAAAACTTTTGGAATA 30425 Query 54505 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 | ||||| ||| || || || |||||||||||||| | |||||| ||||| | ||||| Sbjct 30424 T-TATCC--TTG-TGTATACCAACTGCGACACGCATGAGCATGTGTTGAGGACGCTCAAC 30369 Query 54565 GAT 54567 || Sbjct 30368 AAT 30366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593675319401280