Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq446 116 3e-21 >seq446 Length=43508 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||| || | ||||| |||||||||||||| ||||| ||||||| Sbjct 20834 TCCACCACGAAGGCGGAGAACAAGGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCCGA 20775 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | || || |||||||| || || | || || | ||||||||| || Sbjct 20774 GAGAGTGCGGCCATCTTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 20715 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| ||||||||| ||||| | ||| ||| || || || Sbjct 20714 AATTCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATAGTGTCGGAAGGTTCGAC 20655 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | || ||||| || || || | || ||||||||||| |||||||| || Sbjct 20654 ATCGAGAGTGATGGTTTTACCTGTGAGGGTCTTGACAAATATCTGCATTTTCAA 20601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422227107772976