Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq352 228 8e-55 >seq352 Length=10598 Score = 228 bits (252), Expect = 8e-55 Identities = 591/882 (67%), Gaps = 28/882 (3%) Strand=Plus/Plus Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCAT 16008 ||| |||| ||| | |||||||| || ||||||||||||| ||| |||||| | ||| Sbjct 6799 ATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCAT 6858 Query 16009 AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCT 16068 | ||||| |||||||| | | ||| |||||| || || | | | | | | Sbjct 6859 CCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAAGACG 6918 Query 16069 ATCCGCCACA-AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAA 16127 ||| || ||| ||||| || || || |||||| | | |||||||| || | || | Sbjct 6919 ATCAGC-ACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCTA 6977 Query 16128 CAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTC 16187 | || | || || | | ||| | |||||| || ||| ||| | || || || Sbjct 6978 CTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCTGATACAATGATCTCGG 7037 Query 16188 TTACTACACTATTTAACGGAGGGTT--TAATAAG-TGTTTAAACATTATACAAGCAAAAT 16244 | || || |||| ||| | || | | ||| || ||| ||| | ||| ||||| | Sbjct 7038 TAAC-ACGAGATTTT--GGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCAAAGT 7094 Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304 | || || || ||||| || | ||||| || || || || || || |||||||| | Sbjct 7095 CGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCA 7154 Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364 ||||||||||| | |||||| ||| | |||||||||||| ||||| || ||||| | Sbjct 7155 AACCTCGTTTTTTTAACCAAAAAATACTGCAAAATGAACCAGAGAAGAAAATTCCTTCTA 7214 Query 16365 CTGCGGCAAATGCAACCAATCGCTCACCGTACG--TTCTAtttttactttctatccattt 16422 | || || || || || | ||| ||| | | | |||| || | || |||||| Sbjct 7215 CAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTT--TGTCAGTCCATTG 7272 Query 16423 tttagcccaatttgctttttgtttAACACA--GTTCATGTTCTCTATTGCATTAAATAAA 16480 |||||| || || | |||||| || | || ||| || ||||| || || || Sbjct 7273 AAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACA-GTT-TCGATTGCGTTTAACAAG 7330 Query 16481 TAAtttttttCTTTGCTATCTAA--AATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | ||||||| ||| ||| | ||| | || || || || | | ||||| ||| | Sbjct 7331 TGA--TTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCG 7388 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC-GGATATT--- 16594 ||||||| || || || || || ||||||||||||||||||| ||||| | | ||| Sbjct 7389 AATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCA 7448 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 ||| |||| | || | ||| ||||||||||| || |||||||| || || ||| Sbjct 7449 TGT-CTTCCATG---AAATTGGTTGCCAAGTTTTCGTTTACAATTCCATCACTTGCAGCA 7504 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714 || ||||| || ||||| ||| || | ||||| ||| |||||| |||| Sbjct 7505 AAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGTCC 7564 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 || | | | |||| |||||| | |||||||| || || |||| || ||| Sbjct 7565 CTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCTTA 7624 Query 16775 TACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 ||||||| ||| ||||| | ||| || ||||| | |||| Sbjct 7625 TACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACA 7666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462475947189600