Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq352 230 2e-55 >seq352 Length=10598 Score = 230 bits (254), Expect = 2e-55 Identities = 595/891 (67%), Gaps = 38/891 (4%) Strand=Plus/Plus Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977 ||| |||| ||| | ||||||||| ||||| ||||| |||| | || ||| | ||| Sbjct 6799 ATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCAT 6858 Query 13978 AAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG-TAAT- 14035 | |||||||||||| | | || | ||||||||||| || || || ||| ||| Sbjct 6859 CCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAG--CTGGTAGATAAGA 6916 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 | ||| ||| ||| ||||| ||||| ||||||| | ||||||| || || |||| | Sbjct 6917 CGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCT 6976 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 || || | || | | |||| |||||| | ||||| || ||| ||| Sbjct 6977 ACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCTGA---TACAATGATC 7033 Query 14156 ---GTAATA----ATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACAC 14206 |||| | |||| | |||| ||||| || || ||| | | | ||| Sbjct 7034 TCGGTAACACGAGATTT---TGGAAGTT---TATTTACAAGCTGGTTATACACGAGACAT 7087 Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 ||||| || || || | || ||||| | ||| | ||| || || || || | |||| Sbjct 7088 GCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCT 7147 Query 14267 GGCATCAATCCTCGtttttttAACC--AAAATATTGCAGCGAATGATCCGGAAAAGAATA 14324 |||||||| |||||||||||||||| |||||| |||| ||||| || || ||||| | Sbjct 7148 GGCATCAAACCTCGTTTTTTTAACCAAAAAATACTGCA--AAATGAACCAGAGAAGAAAA 7205 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 |||| || || ||||| ||||||| | |||||| |||| || || | ||||| | | Sbjct 7206 TTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGC-GTATTGTTTGTCA 7264 Query 14385 -TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 |||||| ||||||| ||| || | ||||| || | ||||| || || || Sbjct 7265 GTCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTT 7324 Query 14444 AATAAATGTTCCTTCT---CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || || || | |||| |||| | | ||| | || |||||||| | |||| Sbjct 7325 AACAAGTGATTTTTCTCGGCTTTCTCA---GTAATTAACGTGTCAATAAGAAGAGAATAC 7381 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 | ||| || || |||||||| ||||| || |||||||||||||| |||| ||||| | Sbjct 7382 ACTTCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCA 7441 Query 14561 CATTGTACCTCT--GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 ||||| | ||| | ||| | || ||||| ||||| || || || |||||||| | Sbjct 7442 CATTGCATGTCTTCCATGAAATTGGTT--GCCAAGTTTTCGTTTACAATTCCATCACTTG 7499 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCC 14678 | ||||| || || | |||| ||| |||| | || || |||||||| Sbjct 7500 CAGCAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGT 7559 Query 14679 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738 | || | || | | ||| || | || ||| | |||||||| || |||||| Sbjct 7560 AGTCCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTT 7619 Query 14739 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14789 | ||||||||| |||| || || || | || ||||| | ||||||| Sbjct 7620 TCTTATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482308001160480