Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq352 226 4e-54 seq458 172 7e-38 >seq352 Length=10598 Score = 226 bits (250), Expect = 4e-54 Identities = 630/949 (66%), Gaps = 32/949 (3%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACAT---AACTCCCATTT 33291 ||||||||||| |||||||||||| || ||||| || | |||||| || Sbjct 6735 TTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCAGCAACTCCAACTCCAGCTT 6794 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || ||||| ||||||||||| ||||| || |||||||||| || || ||| | Sbjct 6795 TAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGAT 6854 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 ||| | ||||| ||||| | ||| |||| ||| | | | || | | | || | Sbjct 6855 TCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAA 6914 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471 | ||| || |||||| || ||| ||| | | | |||||||||| || |||| Sbjct 6915 GACGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTT 6974 Query 33472 TAACTGGAAGAGCCACAGTAAGAAAT-TCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||||| | ||| || | | |||| |||| ||| | ||| | || || || ||| Sbjct 6975 CTACTGGTAAAGCATCACTGACAAATCTCTT-TTC--TTGAT-CAACAGCTGATACAATG 7030 Query 33531 AA-TC--TAACG---GTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACAT 33584 | || |||| | || | | || || || | || ||| ||| | |||| Sbjct 7031 ATCTCGGTAACACGAGATTTTGGAA---GTTTATTTACAAGCTGGTTATACACGAGACAT 7087 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || || |||||||| | ||| || || | ||||||||| || || || |||||||| Sbjct 7088 GCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCT 7147 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATAT---GGAAGCGAATGATCCGGAAAAGAAG 33701 ||||| | || || ||||| | |||||| || | || ||||| || || ||||| Sbjct 7148 GGCATCAAACCTCGTTTTTTTAACCAAAAAATACTGCAA---AATGAACCAGAGAAGAAA 7204 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGT- 33758 ||||||||||| ||||| || || | ||||| || || || ||| ||| ||| Sbjct 7205 ATTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGT-TTGTC 7263 Query 33759 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 |||| | ||||||| | ||||||| ||| || ||||| | ||||| || || || Sbjct 7264 AGTCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTT 7323 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || | | ||||| || | || ||| | || || || | |||| ||||| Sbjct 7324 TAACAAGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACAC 7383 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||||||||||||||||||||| || || ||||| || || || |||| || || | | Sbjct 7384 TTCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACA 7443 Query 33938 CTGCACTTCTGTACA--AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 |||| ||| | || |||| | | ||| || ||||| || || ||||||||||| || Sbjct 7444 TTGCATGTCT-TCCATGAAATTGGT-TGCCAAGTTTTCGTTTACAATTCCATCACTTGCA 7501 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 ||||| ||||| | | || || || | |||||| | || ||||| | | Sbjct 7502 GCAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAG 7561 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 || | | || | | | || | ||||| | |||||||| || ||||| || || Sbjct 7562 TCCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTC 7621 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 |||||||| | ||| |||||| || |||||| || | |||||||| Sbjct 7622 TTATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 >seq458 Length=35501 Score = 172 bits (190), Expect = 7e-38 Identities = 367/544 (67%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || |||| ||| || | |||||||| |||||| | ||| |||||||||| | | Sbjct 30904 ACGCGTTCCATGAATAAATCAGGAACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCT 30845 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || || || ||||||||| || | ||||| | | ||||||| ||||||| ||| Sbjct 30844 TCTTCTTTACCATGATTCTTTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGT 30785 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 || | || | || | | ||| ||||| ||| || ||||| | ||| | ||| Sbjct 30784 TCGAGATAAACAGCGAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCA 30725 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 || | |||| |||||||||||||||| | || ||| ||||| ||||||||| || Sbjct 30724 GTATCATTAAAAACTCTCAACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGA 30665 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 |||||| | |||||||||| |||||| | ||| || || || || || Sbjct 30664 ATATAGGAGTTAGATCCACGAATATTGTGAATTGAAATACCAATACCACCAGCATACTTC 30605 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 ||||| |||| || ||| | |||||||| || ||||| || || || |||| Sbjct 30604 GAGATGCATGCACAATTTTTAAGAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATA 30545 Query 63627 TTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGA 63686 | | ||||||||| |||||||| | || ||| || |||||||||| ||| || Sbjct 30544 GTCATGAGAAAACAGGATGACATTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGT 30485 Query 63687 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT----GAGTC 63742 | || || || | ||| || | | | ||||| || | | || || | Sbjct 30484 GTTGCATGTGTGTAATGTTTAGTTGACATCATTTCATACGTTTCCAAAACTTTTGGAATA 30425 Query 63743 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63802 | ||||| ||| || || || |||||||||||||| | |||||| ||||| | ||||| Sbjct 30424 T-TATCC--TTG-TGTATACCAACTGCGACACGCATGAGCATGTGTTGAGGACGCTCAAC 30369 Query 63803 AATT 63806 |||| Sbjct 30368 AATT 30365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629768505718080