Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq352 223 3e-53 seq458 159 3e-34 >seq352 Length=10598 Score = 223 bits (246), Expect = 3e-53 Identities = 554/816 (68%), Gaps = 29/816 (4%) Strand=Plus/Plus Query 11265 ttataaaaattattaa---ttaaaaatctatatccgtagaaaatatatTCTCTTCTTTAT 11321 |||||||| || |||| |||||| || ||| |||||||| |||||||| | Sbjct 6718 TTATAAAAGTT-TTAACGTTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCA- 6775 Query 11322 TTGTAAA--CACCCCCATCTTTTGA-TATTCACTAACTCGTCGTTCGAAAAAATTAGTCT 11378 | || || | ||| |||| || || |||| ||| ||| ||| ||||| || || | Sbjct 6776 --GCAACTCCAACTCCAGCTTTAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTT 6833 Query 11379 TACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTT 11438 | |||| || || ||| | ||| | ||| ||||| | ||| | ||||| | Sbjct 6834 TTCCTTGTAAAGAAATAAGATTCATCCATTCAAATGGATTTTTCGTATTATAAACTTTAT 6893 Query 11439 CACAACCTAACTCTGTTAATAAT-CTATCTGCGACGAATTCTATATACTGAGACATTAAA 11497 |||| || | || || |||| | ||| || |||||| || || || ||||||| Sbjct 6894 CACACCCAAGCTG-GTAGATAAGACGATCAGCACAGAATTCAATGTATTGGCACATTAAT 6952 Query 11498 CAACAATTCATACCTATAAGATCCACCGGAATAGCA--ACTGTCAAAAACTCCTTTTCTA 11555 | ||||||| || ||||| || || || | |||| |||| |||| ||| |||||| Sbjct 6953 GTAGAATTCATTCCAATAAGTTCTACTGGTAAAGCATCACTGACAAAT-CTC-TTTTCTT 7010 Query 11556 TATTAACCGC--AT-CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATA 11612 || ||| || || ||||||| ||| || | | || | || || || | Sbjct 7011 GATCAACAGCTGATACAATGATC-TCG--GTAACACGAGATTTTGGAAGTTTATTTACAA 7067 Query 11613 AATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTT 11672 || ||| ||| | ||| ||||| || || ||||||||||| || | |||| || Sbjct 7068 GCTGGTTATACACGAGACATGCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATT 7127 Query 11673 CATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGC-A 11731 |||| || || || | ||| |||||||| ||||||||||||| |||||| ||| | || | Sbjct 7128 CATTCGAGAAAGTGAGTCCTGGCATCAAACCTCGTTTTTTTAACCAAAAAATA-CTGCAA 7186 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC-TCCATA 11790 ||||||||||| ||||| ||||| || ||||| || || ||||| | || ||| | | | Sbjct 7187 AATGAACCAGAGAAGAAAATTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAA 7246 Query 11791 TAC-CTTGTTGCTAGATA-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC 11848 || | | ||| | | | |||||| ||||| |||| |||| ||| ||||| Sbjct 7247 GACGCGTATTGTTTGTCAGTCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGG 7306 Query 11849 ATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCT 11908 | ||||| || ||||| || || || |||| || || || | | | || || Sbjct 7307 ACAGTTTCGATTGCGTTTAACAAGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCA 7366 Query 11909 ATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 || | | | ||||| ||| |||||||| ||||| ||||| |||||||| ||||| || Sbjct 7367 ATAAGAAGAGAATACACTTCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAG 7426 Query 11969 CATCGTGCCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTAC 12027 ||||| || || | ||| || | || ||| |||| | || || || || ||||| Sbjct 7427 CATCGCGCTTCAGCACATTGCATGTCTTCCATGAAAT-TGGTTGCCAAGTTTTCGTTTAC 7485 Query 12028 AATACCATCACTAGATGCAAAAAATGCTAGTATATG 12063 ||| |||||||| | ||||| || || || || || Sbjct 7486 AATTCCATCACTTGCAGCAAAGAACGCGAGAATGTG 7521 >seq458 Length=35501 Score = 159 bits (176), Expect = 3e-34 Identities = 505/767 (66%), Gaps = 28/767 (4%) Strand=Plus/Minus Query 37696 ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTA 37755 ||||| | |||||||| ||||||| ||||||| | || ||| |||||||| ||| Sbjct 31225 ATAGACGCAAGATTACAGACAGCAATTTCATCTGGTGAAGTATATTCCATAATCTCAGTA 31166 Query 37756 CAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAA 37815 || ||||| |||| | || ||||| | ||| |||| || ||||| ||||||||| | Sbjct 31165 CAAAGATTTGACGATTTGATAGTTCCAAGATTTTTTTGGTTAGATTTGCTATTACAAGCA 31106 Query 37816 TCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGA-TAATAGATTTCCA 37874 ||||| | ||||| || ||||| ||| || |||| ||| | || | || | Sbjct 31105 TCTTTGAAACACATATAGGGAGTTCCGGTTTCGATCTGAGACTCCAATATTTGAAACC-- 31048 Query 37875 TAAACTTCTTG--CTTTAACGATCGCTTTA--AtttttttCTTTGTTT-CGTATTCTATA 37929 ||| || ||| |||| | ||| | || | ||| || |||| |||||| || Sbjct 31047 -AAAGTTTTTGAGCTTTCA---TCGTTGTACGAGCTTTGCCTGAGTTTTCGTATT-TAG- 30994 Query 37930 TATAATTTGTTA-AAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGAC 37987 ||||| | || |||| |||| ||| || | ||||| ||||| ||| | Sbjct 30993 TATAAAGAGCTACAAATTCTTCCGAATGACAATCAGCGAGACCTGGGCATTCATTTGGGC 30934 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 | | ||| ||| |||| || |||| ||||||||||| ||||||||||| ||||| | Sbjct 30933 AGAAGAGACTCCAATCTTGATTCTTTTGAACGCGTTCCATGAATAAATCAGGAACCCAAA 30874 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-T 38106 | || ||| | |||| | | | |||||| || || ||||||| || || | Sbjct 30873 GTCCATAAAAGAGATCTCTTGCACGCGCTTCTTCTTTACCATGATTCTTT-TTCAGTTGA 30815 Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 || || || | |||||| ||||| ||||| | ||||| | | | |||| || | Sbjct 30814 AGGAATTCAAGAATATCACAATGCCAAGGTTCGAGATAAACAGCGAAAGATCCTTTTCGT 30755 Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 || | || || |||| || || | | | || | |||| | | ||| ||||| ||||| Sbjct 30754 TTTCCTCCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAACTCTCAACATTGGTACA 30695 Query 38227 ATACCATTAGATTTGCCGTTTATAC--CGGATATATAAGTACCCTTAG---CTCGTATAT 38281 | |||||| || || || | | || ||||| || |||| | || |||| Sbjct 30694 AGACCATTTGAAGAACCATTGGTTCCACGAATATAGGAG-----TTAGATCCACGAATAT 30640 Query 38282 TACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACG 38341 | || || | || || ||||| |||| || || || | || || | ||| | | Sbjct 30639 TGTGAATTGAAATACCAATACCACCAGCATACTTCGAGATGCATGCACAATTTTTAAGAG 30580 Query 38342 TATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTT 38401 | ||| | || ||||| ||| ||| || || || | | | |||||| ||||||| Sbjct 30579 TGTCATAAATTCCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATGACATTT 30520 Query 38402 GAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 |||| | |||| || || ||||||| || || | ||||||| || Sbjct 30519 GAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGTGTTGCATGTGTG 30473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468488278491840