Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq352 230 3e-55 seq458 161 1e-34 >seq352 Length=10598 Score = 230 bits (254), Expect = 3e-55 Identities = 634/949 (67%), Gaps = 32/949 (3%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAGACAT---AACTCCCATTT 49669 ||||||||||| ||||| |||||| || ||||| || | |||||| || Sbjct 6735 TTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCAGCAACTCCAACTCCAGCTT 6794 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || ||||| ||||||||||| ||||| || |||||||||| || || ||| | Sbjct 6795 TAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGAT 6854 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 ||| | ||||| ||||| | |||||||| ||| | | | || | | | || | Sbjct 6855 TCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAA 6914 Query 49790 ATCTATCCGCGACA-AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | ||| || ||| ||||| || ||| ||| | | | |||||||||| |||||| Sbjct 6915 GACGATCAGC-ACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGT 6973 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAAT-TCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | ||||| | ||| || | | |||| |||| ||| | ||| | || ||| || ||| Sbjct 6974 TCTACTGGTAAAGCATCACTGACAAATCTCTT-TTC--TTGAT-CAACAGCTGATACAAT 7029 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAA---TAAA---TGTTTAAACATCAAACA 49961 ||||| |||| | | |||| | || | || ||| ||| | ||| Sbjct 7030 -GATCT--CGGTAACACGAGATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACA 7086 Query 49962 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 50021 ||| || |||||||| | ||| || || | ||||| ||| || || || |||||||| Sbjct 7087 TGCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCC 7146 Query 50022 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC-GCAAA-TGACCCAGAAAAGAAG 50079 ||||| | || || ||||| | |||||| || || ||||| ||| ||||| ||||| Sbjct 7147 TGGCATCAAACCTCGTTTTTTTAACCAAAAAAT--ACTGCAAAATGAACCAGAGAAGAAA 7204 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--CTGTCATGT- 50136 ||||||||||| || || || || ||||||| || || || ||| ||| ||| Sbjct 7205 ATTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGT-TTGTC 7263 Query 50137 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 |||| | ||||||| | ||||||| ||| || ||||| | ||||| || || || Sbjct 7264 AGTCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTT 7323 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 || | | ||||| || | || ||| | || || || | |||| ||||| Sbjct 7324 TAACAAGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACAC 7383 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 ||||||||||||||||||||| || || ||||| || || || |||| || || | | Sbjct 7384 TTCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACA 7443 Query 50316 CTGCACTTCTGTACA--AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 |||| ||| | || |||| | | || || ||||| || || ||||| ||||| || Sbjct 7444 TTGCATGTCT-TCCATGAAATTGGT-TGCCAAGTTTTCGTTTACAATTCCATCACTTGCA 7501 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 ||||| ||||| | | || || || || ||||| | || ||||| | | Sbjct 7502 GCAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAG 7561 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | || | | | || | ||||| | |||||||| || ||||| || || Sbjct 7562 TCCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTC 7621 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 |||||||| | ||| |||||| || |||||| || | |||||||| Sbjct 7622 TTATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 >seq458 Length=35501 Score = 161 bits (178), Expect = 1e-34 Identities = 364/543 (67%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || |||| ||| || | |||||||| |||||| | ||| |||||||| | | Sbjct 30904 ACGCGTTCCATGAATAAATCAGGAACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCT 30845 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || || ||||||||| || | ||||| | | ||||||| ||||||| ||| Sbjct 30844 TCTTCTTTACCATGATTCTTTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGT 30785 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | || | || | | ||| |||||| ||| || ||||| | ||| | ||| Sbjct 30784 TCGAGATAAACAGCGAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCA 30725 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 || | |||| |||||||||||||||| | || |||||| || | ||||||||| || Sbjct 30724 GTATCATTAAAAACTCTCAACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGA 30665 Query 80179 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 80238 |||||| | |||||||||| |||||| | ||| || || || || || Sbjct 30664 ATATAGGAGTTAGATCCACGAATATTGTGAATTGAAATACCAATACCACCAGCATACTTC 30605 Query 80239 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298 ||||| |||| || ||| | || ||||| || || || || || || |||| Sbjct 30604 GAGATGCATGCACAATTTTTAAGAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATA 30545 Query 80299 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 80358 | | ||||||||| |||||||| | || | ||| || |||||||||| ||| || Sbjct 30544 GTCATGAGAAAACAGGATGACATTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGT 30485 Query 80359 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT----GATTC 80414 | || || || | ||| |||| | | ||||| || | | || || | Sbjct 30484 GTTGCATGTGTGTAATGTTTAGTTGACATCATTTCATACGTTTCCAAAACTTTTGGAATA 30425 Query 80415 TATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 80474 | ||||| ||| || || || || ||||||||||| | |||||| ||||| | ||||| Sbjct 30424 T-TATCC--TTG-TGTATACCAACTGCGACACGCATGAGCATGTGTTGAGGACGCTCAAC 30369 Query 80475 GAT 80477 || Sbjct 30368 AAT 30366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718212810947040