Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq352 237 2e-57 >seq352 Length=10598 Score = 237 bits (262), Expect = 2e-57 Identities = 595/888 (67%), Gaps = 32/888 (4%) Strand=Plus/Plus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 ||| |||| ||| | ||||||||| ||||| ||||| |||| | || ||| | ||| Sbjct 6799 ATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCAT 6858 Query 13646 AAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG-TAAT- 13703 | |||||||||||| | | || | ||||||||||| || || || ||| ||| Sbjct 6859 CCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAG--CTGGTAGATAAGA 6916 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||||||| || ||||| ||||| ||||||| | ||||||| || || |||| | Sbjct 6917 CGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCT 6976 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || || | || | | |||| |||||| | ||||| | || ||| || Sbjct 6977 ACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGC---TGATACAATGATC 7033 Query 13824 ---GTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGCAA 13878 |||| | || | | || ||||| || || ||| | | | ||| |||| Sbjct 7034 TCGGTAACACGAGATTTTGGA--AGTTTATTTACAAGCTGGTTATACACGAGACATGCAA 7091 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | || || || | || ||||| | ||| | ||| || || || || | |||||||| Sbjct 7092 AGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCA 7151 Query 13939 TCAATCCTCGtttttttAACC--AAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 |||| |||||||||||||||| |||||| |||| |||||| || || ||||| ||||| Sbjct 7152 TCAAACCTCGTTTTTTTAACCAAAAAATACTGCA--AAATGAACCAGAGAAGAAAATTCC 7209 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA-TCC 14055 || || ||||| ||||||| | |||||| |||| || || | ||||| | | ||| Sbjct 7210 TTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGC-GTATTGTTTGTCAGTCC 7268 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 ||| ||||||| ||| || | ||||| || | ||||| || || || || | Sbjct 7269 ATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACA 7328 Query 14116 A---ATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172 | || || || |||| | | ||| | || |||||||| | ||||| || Sbjct 7329 AGTGATTTTTCTCGGCTTTCTCA---GTAATTAACGTGTCAATAAGAAGAGAATACACTT 7385 Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATT 14232 | || || |||||||| ||||| || ||||||||||||||||||| ||||| | |||| Sbjct 7386 CCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATT 7445 Query 14233 GTA---CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 | | ||||| | ||| | || ||||| ||||| || || || |||||||| || | Sbjct 7446 GCATGTCTTCC-ATGAAATTGGTT--GCCAAGTTTTCGTTTACAATTCCATCACTTGCAG 7502 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14349 |||| || || | |||| ||| |||| | || || |||||||| | | Sbjct 7503 CAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGT 7562 Query 14350 CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14409 | | || | | ||| || | || ||| | |||||||| || ||||||| | Sbjct 7563 CCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCT 7622 Query 14410 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14457 |||||||| |||| || || || | || ||||| | ||||||| Sbjct 7623 TATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479690605202400