Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq352 264 1e-65 >seq352 Length=10598 Score = 264 bits (292), Expect = 1e-65 Identities = 601/888 (68%), Gaps = 32/888 (4%) Strand=Plus/Plus Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 ||| |||| ||| | ||||||||||||||| ||||| |||| | || ||| | ||| Sbjct 6799 ATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCAT 6858 Query 13434 AAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTC-TA-ATAATAAT 13491 | || ||||||||| | | || | ||||||||||| || || | || |||| | Sbjct 6859 CCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAAGA-- 6916 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 | ||||||| || ||||| ||||| ||||||| | ||||||| || || |||| | Sbjct 6917 CGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCT 6976 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611 || || | || | | | |||| |||||| | ||||| || ||| ||| Sbjct 6977 ACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCTGA---TACAATGATC 7033 Query 13612 TTAATAATGTCATTAGAAGGAGGA----TATTTT--AGATGTTTAAAAATTAAACACGCA 13665 | ||| || ||| ||| ||||| || || ||| | | | ||| ||| Sbjct 7034 TCGGTAA---CACGAGATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCA 7090 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || || || || | || ||||| | ||| | ||| || || || || | ||||||| Sbjct 7091 AAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGC 7150 Query 13726 ATCAATCCTCGtttttttAACC--AAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 ||||| |||||||||||||||| |||||| |||| ||||| || || ||||| |||| Sbjct 7151 ATCAAACCTCGTTTTTTTAACCAAAAAATACTGCA--AAATGAACCAGAGAAGAAAATTC 7208 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA-TC 13842 | || || ||||| ||||||| |||||||| |||| || || | ||||||| | || Sbjct 7209 CTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGC-GTATTGTTTGTCAGTC 7267 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 |||| ||||||| ||| || | ||||| || | ||||||||||| || || Sbjct 7268 CATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAAC 7327 Query 13903 AAATGTTCCTTCT---CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || || | |||| |||| | | ||| | || |||||||| | ||||| | Sbjct 7328 AAGTGATTTTTCTCGGCTTTCTCA---GTAATTAACGTGTCAATAAGAAGAGAATACACT 7384 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 || || || |||||||| ||||| || |||||||||||||| |||| ||||| | ||| Sbjct 7385 TCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACAT 7444 Query 14020 TG--TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 || | || | | | |||| | |||||||||||| || ||||| |||||||| || | Sbjct 7445 TGCATGTCTTCCA-TGAAAT-TGGTTGCCAAGTTTTCGTTTACAATTCCATCACTTGCAG 7502 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 |||| || || | |||| ||| |||| | || || |||||||| | | Sbjct 7503 CAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGT 7562 Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 | | || | | ||| || | || ||| | |||||||| || ||||||| | Sbjct 7563 CCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCT 7622 Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 |||||||| |||| || || || | || ||||| | ||||||| Sbjct 7623 TATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478551494003040