Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq352 214 2e-50 seq458 170 3e-37 >seq352 Length=10598 Score = 214 bits (236), Expect = 2e-50 Identities = 623/952 (65%), Gaps = 38/952 (4%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACAT---AACTCCCATTT 41774 ||||||||||| |||||||||||| || ||||| || | |||||| || Sbjct 6735 TTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCAGCAACTCCAACTCCAGCTT 6794 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || ||||| ||||||||||| ||||| || || ||||||| || || ||| | Sbjct 6795 TAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGAT 6854 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 ||| | ||||| ||||| | |||||||| ||| | | | || | | | || | Sbjct 6855 TCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAA 6914 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 | ||| || |||||| || ||| ||| | | | |||||||||| ||||||| Sbjct 6915 GACGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTT 6974 Query 41955 TAACTGGAAGAGCCACAGTAAGAAAT------TCTTGTTCAATAG---AGACCGCG---T 42002 ||||| | ||| || | | |||| ||||| |||| || | || | | Sbjct 6975 CTACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCTGATACAATGATCT 7034 Query 42003 CTGTTATAATAGATCTTACT-GTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 42061 | || | | |||| || |||| || || | ||| ||| ||| Sbjct 7035 CGGTAACACGAGATTTTGGAAGTTTATTTACAAGCTGG-------------TTATACACG 7081 Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 | |||||| || |||||||| | ||| ||||| | ||||||||| || || || ||| Sbjct 7082 AGACATGCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTG 7141 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 ||||| ||||| | || || ||||| | |||||| ||| |||||| ||||| ||| Sbjct 7142 AGTCCTGGCATCAAACCTCGTTTTTTTAACCAAAAAATACTGCAAAATGAACCAGAGAAG 7201 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACTGTCAT 42239 || ||||||||||| || || || || | ||||| || || | || | | ||| | Sbjct 7202 AAAATTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGT-TT 7260 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||| | ||||||| | ||||||| ||| || ||||| | ||||| || || Sbjct 7261 GTCAGTCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGC 7320 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 || || | | ||||| || | || ||| | || || || | |||| ||| Sbjct 7321 GTTTAACAAGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATA 7380 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 || ||| ||||||||||||||||| || || ||||| || || || |||| || || | Sbjct 7381 CACTTCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGC 7440 Query 42418 AACCTGTACTTCTGTACA--AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | || | ||| | || |||| | | || || |||||||| || ||||| ||||| Sbjct 7441 ACATTGCATGTCT-TCCATGAAATTGGT-TGCCAAGTTTTCGTTTACAATTCCATCACTT 7498 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 || ||||| ||||| | | || || || | |||||||| || | ||| | Sbjct 7499 GCAGCAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCG 7558 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | || | | || | | | || | ||||| |||||||||| || || || || Sbjct 7559 TAGTCCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCT 7618 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 || |||||||| | ||| || ||| || ||||| || | |||||||| Sbjct 7619 TTCTTATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 >seq458 Length=35501 Score = 170 bits (188), Expect = 3e-37 Identities = 567/870 (65%), Gaps = 24/870 (3%) Strand=Plus/Minus Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || |||||||| || || | |||| | | ||||| ||||| ||||| || Sbjct 31223 AGACGCAAGATTACAGACAGCAATTTCATCTGGTGAAGTATATTCCATAATCTCAGTACA 31164 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 |||||| | ||||| ||||| | ||||| ||| ||| || | ||||| ||||| Sbjct 31163 AAGATTTGACGATTTGATAGTTCCAAGATTTTTTTGGTTAGATTTGCTATTACAAGCATC 31104 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 || || ||| | ||||| || ||||| |||||||| || | || ||| | Sbjct 31103 TTTGAAACACATATAGGGAGTTCCGGTTTCGATCTGAGACTCCAATATTTGAAACCAAAG 31044 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTC---TTTCGTATTGTGTATATAA 71939 | |||| || || | | | | || || || ||||||||| ||||| || Sbjct 31043 TTTTTGAGCTTTCATCGT--TGTACGAGCT-TTGCCTGAGTTTTCGTATTTAGTATA-AA 30988 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTGTCT---AATCCAGGACATTCATTCGGACACAT 71996 | | || | ||| || || | || | || || |||||||| || || | Sbjct 30987 GAGCTACAAAT--TCTTCCGAATGACAATCAGCGAGACCTGGGCATTCATTTGGGCAGAA 30930 Query 71997 CAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 | ||| ||| || || ||| || |||| ||| || | |||||||| |||||| Sbjct 30929 GAGACTCCAATCTTGAT--TCTTTTGAACGCGTTCCATGAATAAATCAGGAACCCAAAGT 30872 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 | ||| |||||||| | | || || || || ||||||||| || | ||| Sbjct 30871 CCATAAAAGAGATCTCTTGCACGCGCTTCTTCTTTACCATGATTCTTTTTCAGTTGAAGG 30812 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | | ||||||| ||||||| ||||| | || | || | | ||| ||||| Sbjct 30811 AATTCAAGAATATCACAATGCCAAGGTTCGAGATAAACAGCGAAAGATCCTTTTCGTTTT 30752 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 ||| || ||||| | ||| | ||| || | |||| |||||||||||||||| | || | Sbjct 30751 CCTCCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAACTCTCAACATTGGTACAAGA 30692 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 ||||| || | ||||||||| || |||||| | ||||||||||| |||| Sbjct 30691 CCATTTGAAGAACCATTGGTTCCACGAATATAGGAGTTAGATCCACGAATATTGTGAATT 30632 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 || | ||| || || || || || ||||| |||| || ||| | || ||||| Sbjct 30631 GAAATACCAATACCACCAGCATACTTCGAGATGCATGCACAATTTTTAAGAGTGTCATAA 30572 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 || || || ||| || || |||| | | ||||||||| |||||||| | || Sbjct 30571 ATTCCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATGACATTTGAGGGCGT 30512 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 | ||| || |||||||||| ||| || | || || || | ||| |||| | Sbjct 30511 CGAGTACCAGCATTAAATAGGGTTGGTGTTGCATGTGTGTAATGTTTAGTTGACATCATT 30452 Query 72475 TTGTACGTCTCAATAGCT----GATTCTATATCCCATTGATGTATTCCTACCGCGACACG 72530 | ||||| || | | || || | | ||||| ||| ||||| || || |||||||| Sbjct 30451 TCATACGTTTCCAAAACTTTTGGAATAT-TATCC--TTG-TGTATACCAACTGCGACACG 30396 Query 72531 CATTAACATATGCTGAGGTCTTTCAACGAT 72560 ||| | ||| || ||||| | ||||| || Sbjct 30395 CATGAGCATGTGTTGAGGACGCTCAACAAT 30366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671086884699360