Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq352 221 1e-52 >seq352 Length=10598 Score = 221 bits (244), Expect = 1e-52 Identities = 507/740 (69%), Gaps = 34/740 (5%) Strand=Plus/Plus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924 ||| || | ||| | |||||||||||||||||||||||||| ||| |||||| | ||| Sbjct 6799 ATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCAT 6858 Query 12925 AAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTC-TAG-TAACAAT 12982 | || || |||||||||| | ||| ||| | |||||| | | ||| ||| | Sbjct 6859 CCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAAGA-- 6916 Query 12983 CTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTT 13042 | |||||| || || ||||| || |||||| | | |||||||| || | || | Sbjct 6917 CGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCT 6976 Query 13043 ACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG-TC 13101 || || | ||| || | | ||| | |||||| |||||| ||| |||| | ||| || Sbjct 6977 ACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCT--GATA-CAATGATC 7033 Query 13102 TCT-TATTACGTTCTCTAATGGAGG---ATTTGATAGATGCTTAAACATCATACATGCAA 13157 || || ||| | | |||| | |||| || || ||| ||| | |||||||| Sbjct 7034 TCGGTAACACGAGATTT--TGGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCAA 7091 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 | || ||||| || |||||||| | |||| || || || || || || || |||| Sbjct 7092 AGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCA 7151 Query 13218 TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC-AAACGAACCCGaaaaaaaTATTCCT 13276 | | ||||||||||| | |||||| ||| | || ||| ||||| || || || |||||| Sbjct 7152 TCAAACCTCGTTTTTTTAACCAAAAAATA-CTGCAAAATGAACCAGAGAAGAAAATTCCT 7210 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC---TATTTTTACTCTCTATC 13333 || || || || ||||||| | | |||| || | | || |||| || | || || Sbjct 7211 TCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAG-ACGCGTATTGTT--TGTCAGTC 7267 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || | ||||| || || | ||||||||| | | |||| |||||||| || Sbjct 7268 CATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAAC 7327 Query 13394 AAATAAtttttttC--CTTACTGTCTAAAATATAAGTATCTATCAATAAG-CTATACATT 13450 || | |||||| || ||| | || ||| | || || || || ||| ||||| | Sbjct 7328 AAGTGATTTTTCTCGGCTT--TCTCAGTAATTAACGTGTCAAT-AAGAAGAGAATACACT 7384 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG---AT 13507 || |||||||| ||||| || || ||||| ||||||||||| |||| || || | || Sbjct 7385 TCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACAT 7444 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | |||| | |||| | ||| ||||||||||| || || || ||||| ||| Sbjct 7445 TGCATGTCTTC--CATGAAAT-TGGTTGCCAAGTTTTCGTTTACAATTCCATCACTTGCA 7501 Query 13568 GCaaaaaaaGCAAGTATGTG 13587 ||||| || || || ||||| Sbjct 7502 GCAAAGAACGCGAGAATGTG 7521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430949644798872