Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq352 158 3e-33 seq446 140 7e-28 >seq352 Length=10598 Score = 158 bits (174), Expect = 3e-33 Identities = 309/450 (69%), Gaps = 9/450 (2%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 || || ||| | ||||| ||||| ||||| | |||||||| || || |||||||| | Sbjct 7530 TTCATTTCTCACATTCTCGCGTTCTTTGCTGCAAGTGATGGAATTGTAAACGAAAACTTG 7471 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 | | || ||| |||| | || | ||||||| |||| ||||| || || || Sbjct 7470 GCAACCAATTTCATGGAAGACATGCAATGTGCTGAAGCGCGATGCTTTTATGGTTTTCAA 7411 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020 || ||||| ||||| |||||||| || |||| ||| | || || || | || | Sbjct 7410 ATTGCTATTGAAAACATTCATTCGGAAGTGTATTCTCTTCTTATTGACACGTTAATTACT 7351 Query 269021 GATAACAACGAAAAGAAAAGACTATTTTCTT-CTATGAGAACTATGGACTGTGTGAGaaa 269079 || || ||| || ||| ||| || | || |||| | || || | | | Sbjct 7350 GAGAAAGCCGAGAA-AAATCACTTGTTAAACGCAATCGAAACTGTCCCTTGCGTTAAAGA 7292 Query 269080 aaaaTCTGAATGGGCTCTGAAATGGAT----AAACGATAGCGCGCCTTACGGAGAAAGGT 269135 || ||| ||||||||| |||||| |||| ||| |||| ||| | ||| | Sbjct 7291 GAAGGCTGCATGGGCTCTTCAATGGACTGACAAACAATA-CGCGTCTTTTGCTGAACGAC 7233 Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTC-TTTTGCCGCTATCTTT 269194 | || || || || ||||||||||| || ||||| || || || |||||| | ||| ||| Sbjct 7232 TTGTAGCGTTCGCTGCTGTAGAAGGAATTTTCTTCTCTGGTTCATTTTGCAG-TATTTTT 7174 Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254 ||||| || ||| |||| | ||||||||| | |||||||| || ||||| || | Sbjct 7173 TGGTTAAAAAAACGAGGTTTGATGCCAGGACTCACTTTCTCGAATGAATTAATTTCACGC 7114 Query 269255 GACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || |||||||||||||||||||| || ||| Sbjct 7113 GATGAAGGTTTACACTGCGACTTTGCATGT 7084 >seq446 Length=43508 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || || || || || ||||| || ||||| | || ||| Sbjct 20818 AGAACAAGGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCT 20759 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| ||||| || || || | ||| || |||||||| |||||||| || ||| Sbjct 20758 TCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 20699 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||||| || ||||| || | || ||| |||||| || || || || || || Sbjct 20698 TGGATCTTTTGCTTCACATTCTCGATAGTGTCGGAAGGTTCGACATCGAGAGTGATGGTT 20639 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || || ||||||||||||||||| Sbjct 20638 TTACCTGTGAGGGTCTTGACAAATATCTGCATTTT 20604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151306404707088