Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq227 205 1e-48 seq1143 196 8e-46 >seq227 Length=13040 Score = 205 bits (226), Expect = 1e-48 Identities = 204/262 (78%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||||||||||| | || ||||| |||||||||||||| |||||||||||||||| Sbjct 12077 CGCTAAGCGTCATCGCAAGGTC-CTTCGTGATAACATCCAAGGTATCACCAAGCCAGCTA 12019 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| |||||||||||||| |||||||| | |||| | |||| ||||| | Sbjct 12018 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGCATNAGTGGACTCATCTACGAAGAAA 11959 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| | ||||| | | ||| ||| ||||||| || || |||| Sbjct 11958 CCCGTGGTGTCCTCAAGGTTTTCCTTGAAAACGTAGTCCGTGATGCTGTCACTTACACCG 11899 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| | ||||||||||| | |||||| ||||||| || | || ||||||| Sbjct 11898 AGCACGCTCGCAGGAAGACTGTCACTGCTATGGATGTCGTCTACGCTCTCAAGCGTCAAG 11839 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | |||| |||||||| Sbjct 11838 GCCGCACCCTTTACGGTTTTGG 11817 >seq1143 Length=8675 Score = 196 bits (216), Expect = 8e-46 Identities = 202/262 (77%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||||||| || || ||||| |||||||||||||| |||||||||||||||| Sbjct 4978 CGCTAAGCGTCATCGCAAGGTC-CTTCGTGATAACATCCAAGGTATCACCAAGCCAGCTA 5036 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| |||||||||||||| |||||||| || |||| | |||| ||||| | Sbjct 5037 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGCATCAGTGGACTCATCTACGAAGAAA 5096 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| ||| | ||| ||||||| | | |||| | | ||||||| | || || | Sbjct 5097 CTCGTGGTGTCCTCAAGGTCTTCCTTGAAAACGTTGTACGTGATGCTGTAACATACACAG 5156 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | |||||| |||||||||||||| | |||||| | ||||| || | || || |||| Sbjct 5157 AACACGCTCGCCGTAAGACTGTCACTGCTATGGATGTTGTCTACGCTCTCAAGCGCCAAG 5216 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || ||||| || Sbjct 5217 GCCGCACTCTCTACGGTTTCGG 5238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069498381548