Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq352 208 8e-49 >seq352 Length=10598 Score = 208 bits (230), Expect = 8e-49 Identities = 487/724 (67%), Gaps = 20/724 (3%) Strand=Plus/Plus Query 21190 ATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA-GATTCCA 21248 ||| |||| ||| | |||||| ||||| ||||| ||||||| || || ||| ||||| | Sbjct 6799 ATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTC-A 6857 Query 21249 TAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA-ATAAT 21307 | | ||||||||||||| | ||| | | ||||| ||| || || ||| || |||| Sbjct 6858 TCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAG--CTGGTAGATAAG 6915 Query 21308 -CTATCTGCTACA-AATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 | ||| || ||| ||||| || ||||| ||||||||| | ||||||| || || | || Sbjct 6916 ACGATCAGC-ACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTT 6974 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 ||| || | ||| | | | ||| |||||| | || ||| ||||| || | Sbjct 6975 CTACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGATCAACAGCTGATACAATGATCT 7034 Query 21426 TTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAAT 21485 | | | |||| | | | || | | || ||| ||| | ||||||||| | Sbjct 7035 CGGTAACACGAGATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCAAAGT 7094 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 | || || ||||||||||| | ||||||||||| || || || | || ||||| | Sbjct 7095 CGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCA 7154 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGAC-GC-AAATGCTCCTGAAAAGAAAATGCCCTC 21603 | |||| |||||||||||||| || || || ||||| || || |||||||| || || Sbjct 7155 AACCTCGTTTTTTTAACCAAAAAAT--ACTGCAAAATGAACCAGAGAAGAAAATTCCTTC 7212 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG---ATTCTTTATCCAATATCCA 21660 || ||||| || || || | ||||||| | | | | ||| ||| || |||| Sbjct 7213 TACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTTTGTC---AGTCCA 7269 Query 21661 TTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 || |||||| ||||| ||||||| ||| | || || || || ||||| | Sbjct 7270 TTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACAA 7329 Query 21721 ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780 |||||||| || || || || || | ||||| ||| || Sbjct 7330 GTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCGA 7389 Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAAC 21840 ||| || ||||| || || || ||||| || ||||| |||| || || | |||||| | Sbjct 7390 ATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCAT 7449 Query 21841 CTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 || || |||| | | ||||||||||| ||||| ||||||||||| || ||||| | Sbjct 7450 GTCTTCCATGAAATTGGT-TGCCAAGTTTTCGTTTACAATTCCATCACTTGCAGCAAAGA 7508 Query 21900 ATGC 21903 | || Sbjct 7509 ACGC 7512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531859338332640