Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq352 235 7e-57 seq458 161 1e-34 >seq352 Length=10598 Score = 235 bits (260), Expect = 7e-57 Identities = 632/949 (67%), Gaps = 32/949 (3%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAGACAT---AACTCCCATTT 33013 ||||||||||| |||||||||||| || ||||| || | |||||| || Sbjct 6735 TTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCAGCAACTCCAACTCCAGCTT 6794 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || ||||| ||||||||||| ||||| || |||||||||| || || ||| | Sbjct 6795 TAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGAT 6854 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 ||| | ||||| ||||| | |||||||| ||| | | | || | | | || | Sbjct 6855 TCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAA 6914 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 | ||| || |||||| || ||| ||| | | | |||||||||| ||||||| Sbjct 6915 GACGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTT 6974 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAAT-TCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 ||||| | ||| || | | |||| |||| ||| | ||| | || ||| || ||| Sbjct 6975 CTACTGGTAAAGCATCACTGACAAATCTCTT-TTC--TTGAT-CAACAGCTGATACAAT- 7029 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAA---TAAA---TGTTTAAACATCAAACAT 33306 ||||| |||| | | |||| | || | || ||| ||| | |||| Sbjct 7030 GATCT--CGGTAACACGAGATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACAT 7087 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || || |||||||| | ||| || || | ||||| ||| || || || |||||||| Sbjct 7088 GCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCT 7147 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATAT---GGAAGCGAATGATCCAGAAAAGAAG 33423 ||||| | || || ||||| | |||||| || | || ||||| ||||| ||||| Sbjct 7148 GGCATCAAACCTCGTTTTTTTAACCAAAAAATACTGCAA---AATGAACCAGAGAAGAAA 7204 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGT- 33480 ||||||||||| ||||| || || | ||||| || || || ||| ||| ||| Sbjct 7205 ATTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGT-TTGTC 7263 Query 33481 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||| | ||||||| | ||||||| ||| || ||||| | ||||| || || || Sbjct 7264 AGTCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTT 7323 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || | | ||||| || | || ||| | || || || | |||| ||||| Sbjct 7324 TAACAAGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACAC 7383 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||||||||||||||||||||| || || ||||| || || || |||| || || | | Sbjct 7384 TTCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACA 7443 Query 33660 CTGTACTTCTGTACA--AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 || | ||| | || |||| | | ||||| ||||| || || ||||| ||||| || Sbjct 7444 TTGCATGTCT-TCCATGAAATTGGT-TGCCAAGTTTTCGTTTACAATTCCATCACTTGCA 7501 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777 ||||| ||||| | | || || || | |||||| | || ||||| | | Sbjct 7502 GCAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAG 7561 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || | | || | | | || | ||||| | |||||||| || ||||| || || Sbjct 7562 TCCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTC 7621 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 |||||||| | ||| |||||| ||| |||||| || | |||||||| Sbjct 7622 TTATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 >seq458 Length=35501 Score = 161 bits (178), Expect = 1e-34 Identities = 364/543 (67%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 || |||| ||| || | |||||||| |||||| | ||| |||||||| | | | Sbjct 30904 ACGCGTTCCATGAATAAATCAGGAACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCT 30845 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 || || || || ||||||||| || | ||||| | | ||||||| ||||||| ||| Sbjct 30844 TCTTCTTTACCATGATTCTTTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGT 30785 Query 63336 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63395 || | || | || | | ||| ||||| ||| || ||||| | ||| | ||| Sbjct 30784 TCGAGATAAACAGCGAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCA 30725 Query 63396 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63455 || | |||| |||||||||||||||| | || ||| ||||| ||||||||| || Sbjct 30724 GTATCATTAAAAACTCTCAACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGA 30665 Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515 |||||| | |||||||||| |||||| | ||| || || || || || Sbjct 30664 ATATAGGAGTTAGATCCACGAATATTGTGAATTGAAATACCAATACCACCAGCATACTTC 30605 Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 ||||| |||| || ||| | |||||||| || || || || || || |||| Sbjct 30604 GAGATGCATGCACAATTTTTAAGAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATA 30545 Query 63576 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 63635 | | ||||||||| |||||||| | || | ||| || |||||||||| ||| || Sbjct 30544 GTCATGAGAAAACAGGATGACATTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGT 30485 Query 63636 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT----GAGTC 63691 | || || || | ||| || | | | ||||| || | | || || | Sbjct 30484 GTTGCATGTGTGTAATGTTTAGTTGACATCATTTCATACGTTTCCAAAACTTTTGGAATA 30425 Query 63692 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63751 | ||||| ||| || || || |||||||||||||| | |||||| ||||| | ||||| Sbjct 30424 T-TATCC--TTG-TGTATACCAACTGCGACACGCATGAGCATGTGTTGAGGACGCTCAAC 30369 Query 63752 GAT 63754 || Sbjct 30368 AAT 30366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622898641265760