Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq352 185 1e-41 >seq352 Length=10598 Score = 185 bits (204), Expect = 1e-41 Identities = 586/887 (66%), Gaps = 26/887 (3%) Strand=Plus/Plus Query 92809 TATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCA-C 92867 || || ||||| ||||||||| || ||||| ||||||| ||||| || ||||| | Sbjct 6800 TACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCATC 6859 Query 92868 TAGTGAT-TGGATTCTTGGCGTTATAATACTTT-TCACCGATCAACTCGTACAATAATCT 92925 | | | |||||| || | |||||| ||||| |||| | || ||| | | | Sbjct 6860 CATTCAAATGGATTTTTCGTATTATAA-ACTTTATCACACCCAAGCTGGTAGATAAGACG 6918 Query 92926 ATCAGCTACA-AATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTA 92984 |||||| ||| ||||| ||||| || |||| || | |||||||||| | ||| || Sbjct 6919 ATCAGC-ACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCTA 6977 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCT---TTCTCGATTACAACGGCTTCTTTCAAGATTT 93041 | |||| ||| || | | |||||| |||| ||| |||| ||| | | ||| | Sbjct 6978 CTGGTAAAGCATCACTGAC-AAATCTCTTTTCTTGAT--CAACAGCTGATACAATGATCT 7034 Query 93042 CTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 | | || | | ||||| |||| | ||| | | || |||| | || ||||||| Sbjct 7035 CGGTAACACGAGATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCAAAGT 7094 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || ||||||||||| || ||||| || || ||||| ||| || | ||||| | || Sbjct 7095 CGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCA 7154 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATACCTTCC 93220 |||||||| || | |||||| | | |||||| |||||| || || || ||||| Sbjct 7155 AACCTCGTTTTTTTAACCAAAA-AATACTGCAAAATGAACCAGAGAAGAAAATTCCTTCT 7213 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 || || || || || |||| ||||| |||||| ||| | | || |||||| Sbjct 7214 ACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTTTGTCAGTCCATTGA 7273 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | |||||| | || || | |||| ||||| | |||||||| ||||| || | || | Sbjct 7274 AGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACAAGTGA 7333 Query 93341 TCTCGCTCGTCCGAATCTC-GT-ATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | | |||| | |||| || || | || || || | |||||||||| ||| |||| Sbjct 7334 TTTTTCTCGGC--TTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCGAAT 7391 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | || || || |||||||| || || || || |||| ||||| | |||| | Sbjct 7392 GAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCATGT 7451 Query 93459 CTT-GAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 ||| | |||| | | | | ||||| || || || ||||| ||| ||||| || Sbjct 7452 CTTCCATGAAAT-TGGTTGCCAAGTTTTCGTTTACAATTCCATCACTTGCAGCAAAGAAC 7510 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577 || | || || || || || || || | || || || | || | Sbjct 7511 GCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGTCCCTTGTG 7570 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 || | | ||| |||| ||||| | |||||||| || || || ||||| || ||||| Sbjct 7571 TCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCTTATACATT 7630 Query 93638 TCCCATATGTCTTGATATTGA---ATTGGAAATATGACAAAACGATT 93681 ||||| ||||| | | ||| |||||||| | ||||| || || Sbjct 7631 TCCCAAATGTC---AGAATGAACGATTGGAAAGAGAACAAATCGGTT 7674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556817392700640