Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq274 89.7 1e-12 seq5427 87.8 4e-12 >seq274 Length=12031 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||| || ||||||| ||||||||||||| ||||||||||||||||||| Sbjct 2246 CCCGTCTAGCTCAGTTGGCAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGCC 2305 Query 142565 CCAC 142568 |||| Sbjct 2306 CCAC 2309 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||| || ||||||| ||||||||||||| ||||||||||||||||||| Sbjct 9786 CCCGTCTAGCTCAGTTGGCAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGCC 9727 Query 142565 CCAC 142568 |||| Sbjct 9726 CCAC 9723 >seq5427 Length=1720 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||| ||||||| ||||| ||||||| ||||||||||||||||| Sbjct 75 AGCCCGTCTAGCTCAGTCGGCAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 16 Query 142563 CCCCAC 142568 ||||| Sbjct 15 TCCCAC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027754677124476