Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq446 179 7e-40 seq274 84.2 4e-11 >seq446 Length=43508 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || |||||||| | || | ||| | |||||||| ||||||||||| || || || Sbjct 20834 TCCACCACGAAGGCGGAGAACAAGGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCCGA 20775 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | |||||||| | ||| || || ||||| ||||| | || ||||| || || Sbjct 20774 GAGAGTGCGGCCATCTTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 20715 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||||||||| || |||||| ||| || |||||| ||||| | | ||| || Sbjct 20714 AATTCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATAGTGTCGGAAGGTTCGAC 20655 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||||||||| || |||||||||||||| |||||||||||| Sbjct 20654 ATCGAGAGTGATGGTTTTACCTGTGAGGGTCTTGACAAATATCTGCATT 20606 >seq274 Length=12031 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 84457 CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 |||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||| Sbjct 2246 CCCGTCTAGCTCAGTTGGCAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGCC 2305 Query 84517 CCAC 84520 |||| Sbjct 2306 CCAC 2309 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 84457 CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 |||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||| Sbjct 9786 CCCGTCTAGCTCAGTTGGCAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGCC 9727 Query 84517 CCAC 84520 |||| Sbjct 9726 CCAC 9723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921550559533920