Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq446 138 3e-27 seq99 96.9 8e-15 >seq446 Length=43508 Score = 138 bits (152), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || || || | ||| || |||||||| || ||||| | Sbjct 20834 TCCACCACGAAGGCGGAGAACAAGGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCCGA 20775 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || ||||| | ||||| || |||||||| |||||||| || | || Sbjct 20774 GAGAGTGCGGCCATCTTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 20715 Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 |||||||| || |||||||| ||| |||| ||| || || |||| ||| | ||| | Sbjct 20714 AATTCCTTCCTTGTCCTGGATCTTTTGCTT-CACATTCTCGATAGTGTCGGAAGGTTCGA 20656 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | ||||| ||||| || || || || || |||||||| |||||||||||| Sbjct 20655 CATCGAGAGTGATGGTTTTACCTGTGAGGGTCTTGACAAATATCTGCATT 20606 >seq99 Length=19583 Score = 96.9 bits (106), Expect = 8e-15 Identities = 191/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 325318 ATATATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCC 325377 || || ||| || |||||||||||||| || ||||| |||| | | ||| || || || Sbjct 6700 ATGTACATAACGAGCACTCGCGTGATCTTTTCCACCAAGCAAACGTGTACCAAATTGACC 6641 Query 325378 CTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGAT 325437 | || | || | || || ||||| || ||| | | || || | |||| || Sbjct 6640 ACCTGGGTATAATAAATTAATATTATTCGACCCAACAAAGTTTTGAGCCATACTCACAAT 6581 Query 325438 GGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC-GC 325496 || ||||| | || |||| ||||| ||||| || ||| |||| || ||||| || Sbjct 6580 AGTTCCTTGTAAGGAAACTTCACCATGATGATAAGCAGAATGTTCTGAGACATAACCAGC 6521 Query 325497 TGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTT 325556 | || || ||||| || | || | |||| || || || ||| || | | | |||| Sbjct 6520 T-AATTGAGCAACTTTAATTTCTTTAGTCAGTTTACGTTTAAAACATGCAAACAAAACTT 6462 Query 325557 TCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 325596 | | ||||||||||||||| ||||||| | ||||||| Sbjct 6461 TTCTTTGAGAAGGTTTGAATCCATCAATAATACACGGAAT 6422 Score = 96.9 bits (106), Expect = 8e-15 Identities = 191/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 325318 ATATATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCC 325377 || || ||| || |||||||||||||| || ||||| |||| | | ||| || || || Sbjct 12861 ATGTACATAACGAGCACTCGCGTGATCTTTTCCACCAAGCAAACGTGTACCAAATTGACC 12920 Query 325378 CTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGAT 325437 | || | || | || || ||||| || ||| | | || || | |||| || Sbjct 12921 ACCTGGGTATAATAAATTAATATTATTCGACCCAACAAAGTTTTGAGCCATACTCACAAT 12980 Query 325438 GGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC-GC 325496 || ||||| | || |||| ||||| ||||| || ||| |||| || ||||| || Sbjct 12981 AGTTCCTTGTAAGGAAACTTCACCATGATGATAAGCAGAATGTTCTGAGACATAACCAGC 13040 Query 325497 TGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTT 325556 | || || ||||| || | || | |||| || || || ||| || | | | |||| Sbjct 13041 T-AATTGAGCAACTTTAATTTCTTTAGTCAGTTTACGTTTAAAACATGCAAACAAAACTT 13099 Query 325557 TCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 325596 | | ||||||||||||||| ||||||| | ||||||| Sbjct 13100 TTCTTTGAGAAGGTTTGAATCCATCAATAATACACGGAAT 13139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179560147088008