Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq99 95.1 3e-14 >seq99 Length=19583 Score = 95.1 bits (104), Expect = 3e-14 Identities = 187/274 (68%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 297445 ATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGG 297504 ||| || |||||||||||||| || ||||| |||| | | ||| || || || | || Sbjct 6694 ATAACGAGCACTCGCGTGATCTTTTCCACCAAGCAAACGTGTACCAAATTGACCACCTGG 6635 Query 297505 CAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCC 297564 | || | || || ||||| || ||| | | || || | |||| || || || Sbjct 6634 GTATAATAAATTAATATTATTCGACCCAACAAAGTTTTGAGCCATACTCACAATAGTTCC 6575 Query 297565 TTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC-GCTGAACT 297623 ||| | || |||| ||||| ||||| || ||| |||| || ||||| ||| || | Sbjct 6574 TTGTAAGGAAACTTCACCATGATGATAAGCAGAATGTTCTGAGACATAACCAGCT-AATT 6516 Query 297624 GTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTT 297683 | ||||| || | || | |||| || || || ||| || | | | ||||| | || Sbjct 6515 GAGCAACTTTAATTTCTTTAGTCAGTTTACGTTTAAAACATGCAAACAAAACTTTTCTTT 6456 Query 297684 GAGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717 ||||||||||||| ||||||| | ||||||| Sbjct 6455 GAGAAGGTTTGAATCCATCAATAATACACGGAAT 6422 Score = 95.1 bits (104), Expect = 3e-14 Identities = 187/274 (68%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 297445 ATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGG 297504 ||| || |||||||||||||| || ||||| |||| | | ||| || || || | || Sbjct 12867 ATAACGAGCACTCGCGTGATCTTTTCCACCAAGCAAACGTGTACCAAATTGACCACCTGG 12926 Query 297505 CAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCC 297564 | || | || || ||||| || ||| | | || || | |||| || || || Sbjct 12927 GTATAATAAATTAATATTATTCGACCCAACAAAGTTTTGAGCCATACTCACAATAGTTCC 12986 Query 297565 TTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC-GCTGAACT 297623 ||| | || |||| ||||| ||||| || ||| |||| || ||||| ||| || | Sbjct 12987 TTGTAAGGAAACTTCACCATGATGATAAGCAGAATGTTCTGAGACATAACCAGCT-AATT 13045 Query 297624 GTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTT 297683 | ||||| || | || | |||| || || || ||| || | | | ||||| | || Sbjct 13046 GAGCAACTTTAATTTCTTTAGTCAGTTTACGTTTAAAACATGCAAACAAAACTTTTCTTT 13105 Query 297684 GAGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717 ||||||||||||| ||||||| | ||||||| Sbjct 13106 GAGAAGGTTTGAATCCATCAATAATACACGGAAT 13139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102791881266600