Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq446 109 5e-19 >seq446 Length=43508 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | || ||||| | ||||| ||||| || || Sbjct 20803 GTGGACTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCGAGCTGTTTACCA 20744 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| |||||||||||||| || || || || |||||||| Sbjct 20743 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTC 20684 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || || || | ||| | ||| || || || | || Sbjct 20683 ACATTCTCGATAGTGTCGGAAGGTTCGACATCGAGAGTGATGGTTTTACCTGTGAGGGTC 20624 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || |||||||| Sbjct 20623 TTGACAAATATCTGCATTTT 20604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499605852687840