Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq352 93.3 5e-14 seq458 91.5 2e-13 >seq352 Length=10598 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||| || || || || || | |||||||||||| || ||| Sbjct 7088 GCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCT 7147 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||| || || || ||||| ||||| |||||||| ||||||||||| || Sbjct 7148 GGCATCAAACCTCGTTTTTTTAACCAAAAAATACTGCAAAATGAACCAGAGAAGAAAATT 7207 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || ||| |||||||| | || || || ||||| || Sbjct 7208 CCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGA 7248 >seq458 Length=35501 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 ||||||||||| || || |||| ||||| ||| || | | ||| || | || || Sbjct 30628 ATACCAATACCACCAGCATACTTCGAGATGCATGCACAATTTTTAAGAGTGTCATAAATT 30569 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || || ||||| | || | | ||||| || ||| |||||||| || | | | Sbjct 30568 CCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATGACATTTGAGGGCGTCGA 30509 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG-GGACATCTTATC 117206 |||||||| || || ||||||||||| || || || | || | | |||||| | || Sbjct 30508 GTACCAGCATTAAATAGGGTTGGTGTTGCATGTGTGTA-ATGTTTAGTTGACATCATTTC 30450 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 || || ||||| || ||||| | ||| ||| ||||| | || ||| ||||| | Sbjct 30449 ATACGTTTCCAAAACTTTTGGAATATTATCCTTGTGTATACCAACTGCGACACGCATGAG 30390 Query 117267 CATGTATTGGGG 117278 ||||| ||| || Sbjct 30389 CATGTGTTGAGG 30378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613459377113760