Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq352 163 3e-35 seq446 129 6e-25 >seq352 Length=10598 Score = 163 bits (180), Expect = 3e-35 Identities = 403/598 (67%), Gaps = 20/598 (3%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||||||||| || || || || || | ||||| | ||| || |||||| | Sbjct 7085 CATGCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGT 7144 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG--CCCGAAAAGA 133012 || ||||| | || |||||||| | |||||| || | || ||| || || || |||| Sbjct 7145 CCTGGCATCAAACCTCGTTTTTTTAACCAAAAAAT-ACTGC-AAAATGAACCAGAGAAGA 7202 Query 133013 AGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG 133072 | | || || || || ||||| || || || || || | || | || | || || Sbjct 7203 AAATTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTTTGT 7262 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 | |||| | || |||||| | ||||| ||||| ||||| || | |||||||| |||| Sbjct 7263 CAGTCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGT 7322 Query 133133 TCAACAAACGGAGTTTCTC----TTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAA 133188 | ||||| | |||||| ||| || || || ||||| || || ||| Sbjct 7323 TTAACAAGTGATTTTTCTCGGCTTTCTCAGTAATTAAC----GTGTCAATAAGAAGAGAA 7378 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 |||| |||||| || | ||| || || || |||||||| || |||||||| ||||| || Sbjct 7379 TACACTTCCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTC- 7437 Query 133249 ACCAC-CTGCACTTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 | ||| |||| |||| |||| | | | ||| |||||||| || || || || | Sbjct 7438 AGCACATTGCATGTCTTCCATGAAATTGGTTG-CCAAGTTTTCGTTTACAATTCCATCAC 7496 Query 133307 TGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA-AG-CG 133364 | || || || || || || | ||| ||||| || || |||| || | | || Sbjct 7497 TTGCAGCAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGT--CCGATGAGAGTTT 7554 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 || |||| | ||||| | | ||||| | ||| || | |||||||| || ||||| Sbjct 7555 TTCGTAGTCCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTC 7614 Query 133425 GGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGG 133482 ||||| || ||||| ||| ||||| |||| || ||||| | ||||| ||| Sbjct 7615 AGCTTTCTTATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATCGG 7672 >seq446 Length=43508 Score = 129 bits (142), Expect = 6e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| ||||| || || || ||||| || ||||||||||| |||| ||||| | Sbjct 20604 AAAATGCAGATATTTGTCAAGACCCTCACAGGTAAAACCATCACTCTCGATGTCGAACCT 20663 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | || |||| |||| ||||| || |||||||| | ||| Sbjct 20664 TCCGACACTATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 20723 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | ||| || |||||||| || || | ||||| ||| |||||| Sbjct 20724 CAGCAGCGTCTCATCTTCGCTGGTAAACAGCTCGAAGATGGCCGCACTCTCTCGGACTAC 20783 Query 38421 AACATCCAAAAGGA 38434 |||||||||||||| Sbjct 20784 AACATCCAAAAGGA 20797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500133811530240