Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq83 279 4e-69 seq287 158 9e-33 seq5361 125 5e-23 seq1818 123 2e-22 seq99 111 1e-18 >seq83 Length=20893 Score = 279 bits (308), Expect = 4e-69 Identities = 562/820 (69%), Gaps = 28/820 (3%) Strand=Plus/Plus Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT------GA 517966 |||||||| ||||||||| |||| | ||| | || || ||| || | || | || Sbjct 14813 CGTTTAGCTCGTTCACATACTGTACGTAGGCGTCTTACTGCTCTTTCAGAGTTTGCGGGA 14872 Query 517967 TTCAAATCTGTTTTATATTTTCTCTTGAAAT-CTTCAACACACCATGTTACAAGACGAT- 518024 || | | ||| | |||| | | ||||| ||| | | | ||||| || | ||| Sbjct 14873 TTT---TTTCCTTTGTTTTTT-TGTCGAAATTCTTTTAGAAA--ATGTTCCACAATGATA 14926 Query 518025 -TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 ||||||||||||| ||||| || | |||||| || | ||||| |||| |||| Sbjct 14927 TTATCAAAATCTTCTCCTCCTAAATGAGTATTACCAGCGGTAGCAAGAACTTCAAAAATC 14986 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||| | || | | | ||||| |||||| ||| || ||||||| ||| || || || Sbjct 14987 CCACCCTCTATTGCAAGAAGAGACACATCAAAGGTGCCTCCACCCAAATCGAATATGAGA 15046 Query 518144 A--CATTCATTTCTTTGTCTTGGTTT--TTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 | | | || | | ||||| ||||| | |||||| || | |||||||||||| Sbjct 15047 ATGCGGCGAACTCCAGAT-TCGGTTTGTTTATCCAAACCATAGGCTATAGCAGCAGCAGT 15105 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 ||| ||||||||||||| ||||| | ||| |||||||| || || |||||||| || | Sbjct 15106 TGGCTCATTAATAATTCGTAAAACTTGAAGTCCAGCAATACTGCCAGCATCTTTCGTTGA 15165 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319 ||| | ||| | ||| || ||||| || ||||||||||| || ||| || ||| || Sbjct 15166 TTGACGTTGAGCATCATTGAAATACGCTGGAACAGTAATTACTGCACTAGAGACTGATTC 15225 Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 518379 ||| | ||| | || || |||||| || ||| | |||||| || |||| || Sbjct 15226 ACCCAAATAGTCTTCAGCAATTGTTTTCATCTTTGATAACACCATTGAAGATATTTCCTC 15285 Query 518380 TGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAAT-AT-GGTTTATTACCA 518437 | ||| | || | |||| | | || ||| | ||| || ||||||| ||| Sbjct 15286 AGCAGAAAAATGTCTCTCTTCACCTCGCCATTCAACT--AGAATCATCGGTTTATCACCT 15343 Query 518438 ACAT---TAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTA 518494 | ||| |||||||||||||||| | | | ||| || || | || || Sbjct 15344 GCTCCGCTAAATACTTTAAATGGCCAGTGTGTTAAATCATTCTGTACCACGGGATCTGTA 15403 Query 518495 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCT 518554 ||| || || |||| || ||||| |||||||||||||| || ||||| | ||| || Sbjct 15404 AAAGTTCGCCCGATTAGACGCTTTGCGTCAAAAATAGTATTTGTGGGATTCAAAGCAACT 15463 Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 ||| ||| || || |||||||| || | || || || | || | |||||||||||| Sbjct 15464 TGACTTTTTGCAGCGTCTCCAATTAGTCGCTCCGTATCATTGAAAGCTACATATGATGGA 15523 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 || || |||| |||||||| || | ||||||||| || | | |||| ||||| ||||| Sbjct 15524 GTCGTCCGATGTCCTTGATCGTTTGAAATAATTTCCACCTGATCATTCTGCCAAACACCA 15583 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAA 518714 |||||| | | || || || | || |||||||| |||| Sbjct 15584 ACACAAGAATATGTCGTCCCAAGGTCTATACCAAT-GCAA 15622 Score = 152 bits (168), Expect = 4e-31 Identities = 200/272 (74%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 517465 AGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACC 517524 ||||| || || |||| | |||||| |||||||||| |||||| || |||| | ||| Sbjct 14159 AGGAAGAGTCGTATTTCGAAGAATAATTTTGGTCATAACACCACCAGCCGTTTGAACACC 14218 Query 517525 AAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTG-AC 517583 | || | ||||| ||||| | ||| | || || | ||||| | || | || Sbjct 14219 GACGGATAAAGGAGCCACATCTAATAGTAAAAGTTTCTCT-GTTTTGGAAGAGGTAACAC 14277 Query 517584 CAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG 517643 || | || ||||| ||||||| |||||| |||||||||||||||||||| |||||| | Sbjct 14278 CATCGAGTATAGCAGCTTGAACAGCAGCTCCATATGCAACAGCTTCATCTTGATTAATCG 14337 Query 517644 TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATA 517702 | ||| ||||| |||||||||||| ||| | |||||| | ||| ||| | ||||| Sbjct 14338 ACTGATTCAGTTTCTTACCATTGAAATAATCTTGAAGAAGAT-TCTGCACCATTGGAATC 14396 Query 517703 CGAGATGATCCTCCAACTAATACAATTTCATG 517734 |||||||| || || || | ||| | |||||| Sbjct 14397 CGAGATGAACCACCTACAAGTACCACTTCATG 14428 >seq287 Length=11809 Score = 158 bits (174), Expect = 9e-33 Identities = 217/301 (72%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| |||||||| ||||| | | ||||| || | || || | ||||| |||| || Sbjct 223 ATCGAAATCTTCCCCTCCAAGATGAGTATCACCAGCAGTTGCACGTACTTCAAAAATACC 282 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 |||||||| | ||| | ||||||| || |||||||| | |||||| || | ||| Sbjct 283 ATCTTCAATTTGGAGAAGGGATACATCAAATGTACCACCACCAAGATCAAATATTAATAC 342 Query 518146 ATTCATTTCTTTGTCT-TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | | | | || | | | ||| | ||||| || | ||| |||||||| |||| Sbjct 343 AGACTGTGGGGTATCGCTACTCCCTTTCATG-CCATATGCTATAGCTGCAGCAGTAGGTT 401 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 |||| |||||||||| |||||||| |||||||| | || ||||||||||| || | | Sbjct 402 CATTGATAATTCTCATGACATTAAGGCCAGCAATACGACCAGCATCTTTAGTAGCATTAC 461 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAA 518324 ||| ||||||||||||||||||||| ||||| || |||| ||||||| |||| | Sbjct 462 GTTGACTATCGTTAAAATATGCAGGAACTGTAATCACAGCATTCTTTACTTCACTACCGA 521 Query 518325 T 518325 | Sbjct 522 T 522 >seq5361 Length=1785 Score = 125 bits (138), Expect = 5e-23 Identities = 246/355 (69%), Gaps = 18/355 (5%) Strand=Plus/Minus Query 517388 CGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTT-GATTATCTGAATAAGTTGTAA 517445 ||||| || || || | |||||| || | ||| ||| |||||||| || |||||||| Sbjct 584 CGTTCTCCTTCAAACACTTGGATCAGCA--TACTTTTTTGATTATCTTCATGAGTTGTAA 527 Query 517446 ATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATAC 517505 | | | | ||||||| ||| | || || || | ||| | | ||| ||| | || Sbjct 526 AGATTTGTGTTTTTTTAGTAGGCACAGTAGTATTACGTGGAATTAAAATGGACATTACAC 467 Query 517506 CACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 517565 ||||||| ||||| | || | || ||||| || ||||||| || | ||||| || | Sbjct 466 CACCTGCGGTTTCGAGCCCTAATGAGAGAGGCGTAACATCAAGTAATAAAATATCTTCAC 407 Query 517566 GTTTTTCATCA---GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 |||| || |||||| ||| |||| ||||||||||| | ||||| |||| | Sbjct 406 CAGCTTCACCAATAGTTTGATCAA---GAATTGCTGCTTGAATCGTCGCACCCCATGCTA 350 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT--TGAAAG 517680 |||||||||||||||||| | ||| ||| | ||| || | |||||| | || || Sbjct 349 CAGCTTCATCAGGATTAATACTTTTATTCGGAGGTTTTCC-TCCAAAAAACTCCTGTAAC 291 Query 517681 AAG--TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 | | ||| ||| || |||||||| | || || ||||| | |||| ||||| Sbjct 290 ATGGCTTG---TACTTTTGGAATACGTGTCGAACCACCAACAAGAACAACTTCAT 239 >seq1818 Length=990 Score = 123 bits (136), Expect = 2e-22 Identities = 310/461 (67%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 517094 TAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCT-GCTTCTTC 517152 || ||||| ||| |||| |||| | ||||| ||||| || | |||| | |||| Sbjct 503 TAGTTTTCGAATGCATTCTTAGCAACAACACGAGCTTGTTGAGCTTCATCTTGGCTCTTG 444 Query 517153 AAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT 517212 || || || |||||| ||| ||| | ||||||| ||||| || || | || |||| Sbjct 443 AACTT-TTCAGCTTCATTAACCATGCGGTCAATTTCATCTTTGGACAAGCGACCA-GATT 386 Query 517213 A-TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 517271 || |||| ||| || || ||| || || || ||||| || |||| Sbjct 385 CGTTTTTAATTTGAATCTTGTTTTCTTTTCCAGTAGAAACTTCTTTAGCAGTTACGTTAA 326 Query 517272 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGA-GCA 517330 |||||||||| ||||| | ||| |||| || ||||||||| || || | || ||| Sbjct 325 GAATACCATTAGCATCAATATCGTATGTAACGCAAATTTGAGGAACACCAC---GAGGCA 269 Query 517331 --GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 517388 |||||||| || || | | |||| | || || | || |||||||| || | | Sbjct 268 TTGGTGGGATTCCATCGAGTTGAAATTTACCAAGTCTGTTGTTATCTTTGGTCATGGAAC 209 Query 517389 GTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA 517448 ||||||| || ||| ||| || ||| ||||||| ||||| || || || | || | Sbjct 208 GTTCACCTTCATAAACTTGAATCAAGACTCCAGTTTGGTTATCAGAGTAGGTGG--AAAA 151 Query 517449 CTCTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACC 517506 | ||| || || ||||| || ||||| | ||||| | | ||||| | ||| Sbjct 150 GGTTTGATCCTTCTTTGCTGGAATGGTAGTGTTACGCTCAATGAGGGTAGTCATGACACC 91 Query 517507 ACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 || || ||||| | |||||||||||| || || ||||||| Sbjct 90 TCCAGCGGTTTCAAGACCAAGAGAAAGTGGGGTTACATCAA 50 >seq99 Length=19583 Score = 111 bits (122), Expect = 1e-18 Identities = 213/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| ||||||| || ||||||||||| |||||| |||| || || |||| | Sbjct 5494 TGTACTTTAATTTTAACTGAGGGAGATTCTGCTAAAGCATTAGCGATTGCTGGATTATCA 5553 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || ||||| |||||| ||| ||| || || ||| | | |||||||| ||| ||||| | Sbjct 5554 GTCATTGGTAGAGATAATTTTGGTGTATTTCCATTGAAAGGAAAACCTTTAAATGTACGT 5613 Query 635561 GATGCTA-GTCCTaaaaaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaaaTTGT 635619 ||||||| || | ||| ||| | || || ||||| | |||| | ||| | | Sbjct 5614 GATGCTACGTAC-GCAAATATTAAAAAGAACGAAGAAATCCAAACAATTATTAAAGTGAT 5672 Query 635620 TGGACTTGAACAAGGAAAAGTTTATGA------TGATCTCAAAGGTTTACGATATGGTAG 635673 ||| | || | | |||| ||| || || | ||| | | || |||||| Sbjct 5673 TGGGTTAGATCGAAATAAAGATTACGAACAAGTTGGATTGAAATCTCTTCGGTATGGTTC 5732 Query 635674 TATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAA 635733 | |||||||| | ||||||||||| | |||||| | || |||||||| | | || || Sbjct 5733 TGTTATGATTATGGCTGATCAAGACGATGATGGTTCTCACATCAAAGGTCTTTTAATTAA 5792 Query 635734 TTTTATCCATTG 635745 |||| | |||| Sbjct 5793 TTTTTTTGATTG 5804 Score = 111 bits (122), Expect = 1e-18 Identities = 213/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| ||||||| || ||||||||||| |||||| |||| || || |||| | Sbjct 14067 TGTACTTTAATTTTAACTGAGGGAGATTCTGCTAAAGCATTAGCGATTGCTGGATTATCA 14008 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || ||||| |||||| ||| ||| || || ||| | | |||||||| ||| ||||| | Sbjct 14007 GTCATTGGTAGAGATAATTTTGGTGTATTTCCATTGAAAGGAAAACCTTTAAATGTACGT 13948 Query 635561 GATGCTA-GTCCTaaaaaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaaaTTGT 635619 ||||||| || | ||| ||| | || || ||||| | |||| | ||| | | Sbjct 13947 GATGCTACGTAC-GCAAATATTAAAAAGAACGAAGAAATCCAAACAATTATTAAAGTGAT 13889 Query 635620 TGGACTTGAACAAGGAAAAGTTTATGA------TGATCTCAAAGGTTTACGATATGGTAG 635673 ||| | || | | |||| ||| || || | ||| | | || |||||| Sbjct 13888 TGGGTTAGATCGAAATAAAGATTACGAACAAGTTGGATTGAAATCTCTTCGGTATGGTTC 13829 Query 635674 TATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAA 635733 | |||||||| | ||||||||||| | |||||| | || |||||||| | | || || Sbjct 13828 TGTTATGATTATGGCTGATCAAGACGATGATGGTTCTCACATCAAAGGTCTTTTAATTAA 13769 Query 635734 TTTTATCCATTG 635745 |||| | |||| Sbjct 13768 TTTTTTTGATTG 13757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780512949138616