Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq458 163 4e-35 seq4407 140 4e-28 seq2023 140 4e-28 seq1166 140 4e-28 seq352 100 4e-16 >seq458 Length=35501 Score = 163 bits (180), Expect = 4e-35 Identities = 652/1013 (64%), Gaps = 29/1013 (3%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| ||||||| ||||| | ||||| || ||| ||||| |||||||| | Sbjct 30385 ACATGCTCATGCGTGTCGCAGTTGGTATACACAAGGATAATATTCCAAAAGTTTTGGAAA 30444 Query 111679 CATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTG 111738 | || || | |||||| | | || || |||||||||||||| || || |||| Sbjct 30445 CGTATGAAATGATGTCAACTAAACATTACACACATGCAACACCAACCCTATTTAATGCTG 30504 Query 111739 GTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCA 111798 |||| | | | || |||||||| ||||| || || | | || || || || || Sbjct 30505 GTACTCGACGCCCTCAAATGTCATCCTGTTTTCTCATGACTATGAAAGAAGACTCTATTG 30564 Query 111799 ATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCG 111858 | || ||||| | |||||| | | ||||| ||||| |||| ||||||||||| | Sbjct 30565 AAGGAATTTATGACACTCTTAAAAATTGTGCATGCATCTCGAAGTATGCTGGTGGTATTG 30624 Query 111859 GGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAAT 111918 | || || || || | | | || || |||| | || || |||||| | Sbjct 30625 GTATTTCAATTCACAATATTCGTGGATCTAACTCCTATATTCGTGGAACCAATGGTTCTT 30684 Query 111919 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAG 111978 || ||||| || | |||||| | | || ||||| | || || || || || | |||| Sbjct 30685 CAAATGGTCTTGTACCAATGTTGAGAGTTTTTAATGATACTGCTCGTTACGTTGATCAAG 30744 Query 111979 CTGGGCG---TCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 112035 || | || || |||||| |||| || ||||| || || ||||| ||||| Sbjct 30745 GGGGAGGAAAACGAAAAGGATCTTTCGCTGTTTATCTCGAACCTTGGCATTGTGATATTC 30804 Query 112036 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTC 112094 | || |||||| | || || || ||| | || || |||| |||| | |||||| Sbjct 30805 TTGAATTCCTTCAACTGAAAAAGAATCATGGTAAAGAAGAAGCGC-GTGCAAGAGATCTC 30863 Query 112095 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 112154 || | | || ||| |||| ||| | |||||| | | ||| | ||| | ||||| Sbjct 30864 TTTTATGGACTTTGGGTTCCTGATTTATTCATGGAACGCGTTCAAAAGAATCAAGATTGG 30923 Query 112155 TCTCTCTTTTGTCCAGA-CAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTG 112212 |||||| || ||| | || || || |||||| | || || | | | || || |||| Sbjct 30924 AGTCTCTTCTGCCCAAATGAATGC-CCAGGTCTCGCTGATTGTCATTCG-GAAGAATTTG 30981 Query 112213 AAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA-----CTGCGACGGTGCCAGC 112267 ||| || || || || ||||| ||| || ||| | | | ||| || ||| Sbjct 30982 TAGCTCTTTATACTAAATACGA-----AAACTCAGGCAAAGCTCGTACAACGATGAAAGC 31036 Query 112268 TGCCGATGTGTGG----AAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 | | | ||| ||| ||| | ||||||| | ||| || || || || |||| Sbjct 31037 TCAAAAACTTTGGTTTCAAA--TAT--TGGAGTCTCAGATCGAAACCGGAACTCCCTATA 31092 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383 || || |||||| || ||||| || ||| ||||| ||| | || ||||| Sbjct 31093 TGTGTTTCAAAGATGCTTGTAATAGCAAATCTAACCAAAAAAATCTTGGAACTATCAAAT 31152 Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443 || || || ||||| || || |||||| ||| |||||| | ||||| |||| Sbjct 31153 CGTCAAATCTTTGTACTGAGATTATGGAATATACTTCACCAGATGAAATTGCTGTCTGTA 31212 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 112503 | || || || ||| ||| |||||| ||| ||| | | | |||| ||| | || Sbjct 31213 ATCTTGCGTCTATCAATCTTTCCAAGTTTGTTGATGCTAAAAATCGAACATATGACTTTG 31272 Query 112504 AAAAACTCCACGAAGT-TACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 | |||||| | | || | |||| ||| || | || |||| ||| |||||| Sbjct 31273 AGAAACTCGTCAAGGTGTCTGAAATGTGT-GCATATAATTTAAATCAAGTCATTGATTTG 31331 Query 112563 AATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 || | || || ||||| |||||||| || || ||| | || || ||||| Sbjct 31332 AACTACTATCCAGTTGAAGAAGCTCGTAATTCAAACATGCGTCATCGACCAAT 31384 >seq4407 Length=2415 Score = 140 bits (154), Expect = 4e-28 Identities = 277/410 (68%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 185303 CACGATAATGCCGAACAATTTGACGCAAGGACTGAATACTCTATGCGATATCTACAAATC 185362 |||||||| ||| |||||| | || |||||| | | | | ||| ||||| | Sbjct 1091 CACGATAACTGTGAAGTATTTGATGAAAAAACTGAAATGTTTTTCAGGTATGTACAAGTA 1150 Query 185363 TTGACTGCGTGTTGTGATTCTTTTGCACACGGTGCAAATGATGTCGCCAATTCAATCGGT 185422 || ||| ||||| ||| |||| | || ||||||||||| || || || || || ||| Sbjct 1151 TTTACTTGCTGTTGCGATAGTTTTTCTCATGGTGCAAATGACGTTGCTAACTCTATTGGT 1210 Query 185423 CCATTTGCCGCTATTTATGCCATCTACAAATCAGGTAAAGTCAGTAAGAATGCCGACATG 185482 || ||||| || ||||||| | || || |||| | || |||||| || | Sbjct 1211 CCGTTTGCTGCAATTTATGTGGTTTATAATGCAGGAGAGGTTTCTAAGAAAAATGAACTT 1270 Query 185483 GGTAATGACGCATATTGGATTCTCTCACTCGGTGCCACCGGTATCGTTGCGGGTCTCTCC 185542 || ||||||||||||||||||| | |||||||| || || || || | | Sbjct 1271 GGAGATGACGCATATTGGATTCTTGCTCTCGGTGCTGTTGGGATTGTAATTGGGTTAGCT 1330 Query 185543 CTCTACGGTTACAAGATTCTAAACGCCCTTGGCACTAAAATGGCAAAACTTACACCGAGT 185602 | || |||||||||||| | | | ||||| || |||||| ||| || || Sbjct 1331 ATTTATGGTTACAAGATTATGGAAGTTCTTGGTACACAAATGGTGAAATGCACTCCTTCA 1390 Query 185603 CGTGGTATTTGTATTGAACTTGGTGCAGCCGCTGTGATCATTTTGGGATCACGATTAGGT 185662 | || ||| ||||||| | ||||| | ||||| |||||| |||| || || | || Sbjct 1391 AGAGGATTTTCTATTGAATTAGGTGCCGTTGCTGTAATCATTATGGGTACAAGACTCGGA 1450 Query 185663 TGGCCTCTCTCTACGACACATTGCCAAGTTGGTGCAACCGTTGGTGTTGC 185712 || || || || |||||||||||||| ||||| || |||||| || Sbjct 1451 ATTCCACTTTCGACAACACATTGCCAAGTAGGTGCTACGTGTGGTGTAGC 1500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 184685 CATGTCGTAAAAACAATACGAAAAGGAATCAGCGATCAAGAATGTTTTGTTGACGACCCC 184744 ||||| ||| || || || ||||| || || |||||||| |||| ||| | || Sbjct 350 CATGTAACAAAGACTATTCGCAAAGGTATTGCNGACCAAGAATGCTTTGAAGACAATCCT 409 Query 184745 GGACTTCTCATGTATGGATGTTTATGTGTTATACTGTCAGTCGCTATATGG--TTAATTG 184802 | || |||||||||||| | |||||| | | | || || || ||| ||| ||| Sbjct 410 GCTCTGCTCATGTATGGAATGATGTGTGTTCTTTTCGCTGTTGCAATCTGGCTTTACTTG 469 Query 184803 TTGCGTCTTATTTTGAAATGCCTGTATCTACAACACATTCATGTGTCGGTGGCATGATTG 184862 ||| || | | |||||||||| |||||| ||||| ||||||||||| || ||| Sbjct 470 --GCGACTAAATGGAGAATGCCTGTAAGTACAACTCATTCTTGTGTCGGTGGTATTGTTG 527 Query 184863 GAATGACGATGGT 184875 | ||||| ||||| Sbjct 528 GTATGACTATGGT 540 >seq2023 Length=5341 Score = 140 bits (154), Expect = 4e-28 Identities = 277/410 (68%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 185303 CACGATAATGCCGAACAATTTGACGCAAGGACTGAATACTCTATGCGATATCTACAAATC 185362 |||||||| ||| |||||| | || |||||| | | | | ||| ||||| | Sbjct 1091 CACGATAACTGTGAAGTATTTGATGAAAAAACTGAAATGTTTTTCAGGTATGTACAAGTA 1150 Query 185363 TTGACTGCGTGTTGTGATTCTTTTGCACACGGTGCAAATGATGTCGCCAATTCAATCGGT 185422 || ||| ||||| ||| |||| | || ||||||||||| || || || || || ||| Sbjct 1151 TTTACTTGCTGTTGCGATAGTTTTTCTCATGGTGCAAATGACGTTGCTAACTCTATTGGT 1210 Query 185423 CCATTTGCCGCTATTTATGCCATCTACAAATCAGGTAAAGTCAGTAAGAATGCCGACATG 185482 || ||||| || ||||||| | || || |||| | || |||||| || | Sbjct 1211 CCGTTTGCTGCAATTTATGTGGTTTATAATGCAGGAGAGGTTTCTAAGAAAAATGAACTT 1270 Query 185483 GGTAATGACGCATATTGGATTCTCTCACTCGGTGCCACCGGTATCGTTGCGGGTCTCTCC 185542 || ||||||||||||||||||| | |||||||| || || || || | | Sbjct 1271 GGAGATGACGCATATTGGATTCTTGCTCTCGGTGCTGTTGGGATTGTAATTGGGTTAGCT 1330 Query 185543 CTCTACGGTTACAAGATTCTAAACGCCCTTGGCACTAAAATGGCAAAACTTACACCGAGT 185602 | || |||||||||||| | | | ||||| || |||||| ||| || || Sbjct 1331 ATTTATGGTTACAAGATTATGGAAGTTCTTGGTACACAAATGGTGAAATGCACTCCTTCA 1390 Query 185603 CGTGGTATTTGTATTGAACTTGGTGCAGCCGCTGTGATCATTTTGGGATCACGATTAGGT 185662 | || ||| ||||||| | ||||| | ||||| |||||| |||| || || | || Sbjct 1391 AGAGGATTTTCTATTGAATTAGGTGCCGTTGCTGTAATCATTATGGGTACAAGACTCGGA 1450 Query 185663 TGGCCTCTCTCTACGACACATTGCCAAGTTGGTGCAACCGTTGGTGTTGC 185712 || || || || |||||||||||||| ||||| || |||||| || Sbjct 1451 ATTCCACTTTCGACAACACATTGCCAAGTAGGTGCTACGTGTGGTGTAGC 1500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 184685 CATGTCGTAAAAACAATACGAAAAGGAATCAGCGATCAAGAATGTTTTGTTGACGACCCC 184744 ||||| ||| || || || ||||| || || |||||||| |||| ||| | || Sbjct 350 CATGTAACAAAGACTATTCGCAAAGGTATTGCNGACCAAGAATGCTTTGAAGACAATCCT 409 Query 184745 GGACTTCTCATGTATGGATGTTTATGTGTTATACTGTCAGTCGCTATATGG--TTAATTG 184802 | || |||||||||||| | |||||| | | | || || || ||| ||| ||| Sbjct 410 GCTCTGCTCATGTATGGAATGATGTGTGTTCTTTTCGCTGTTGCAATCTGGCTTTACTTG 469 Query 184803 TTGCGTCTTATTTTGAAATGCCTGTATCTACAACACATTCATGTGTCGGTGGCATGATTG 184862 ||| || | | |||||||||| |||||| ||||| ||||||||||| || ||| Sbjct 470 --GCGACTAAATGGAGAATGCCTGTAAGTACAACTCATTCTTGTGTCGGTGGTATTGTTG 527 Query 184863 GAATGACGATGGT 184875 | ||||| ||||| Sbjct 528 GTATGACTATGGT 540 >seq1166 Length=8465 Score = 140 bits (154), Expect = 4e-28 Identities = 277/410 (68%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 185303 CACGATAATGCCGAACAATTTGACGCAAGGACTGAATACTCTATGCGATATCTACAAATC 185362 |||||||| ||| |||||| | || |||||| | | | | ||| ||||| | Sbjct 1091 CACGATAACTGTGAAGTATTTGATGAAAAAACTGAAATGTTTTTCAGGTATGTACAAGTA 1150 Query 185363 TTGACTGCGTGTTGTGATTCTTTTGCACACGGTGCAAATGATGTCGCCAATTCAATCGGT 185422 || ||| ||||| ||| |||| | || ||||||||||| || || || || || ||| Sbjct 1151 TTTACTTGCTGTTGCGATAGTTTTTCTCATGGTGCAAATGACGTTGCTAACTCTATTGGT 1210 Query 185423 CCATTTGCCGCTATTTATGCCATCTACAAATCAGGTAAAGTCAGTAAGAATGCCGACATG 185482 || ||||| || ||||||| | || || |||| | || |||||| || | Sbjct 1211 CCGTTTGCTGCAATTTATGTGGTTTATAATGCAGGAGAGGTTTCTAAGAAAAATGAACTT 1270 Query 185483 GGTAATGACGCATATTGGATTCTCTCACTCGGTGCCACCGGTATCGTTGCGGGTCTCTCC 185542 || ||||||||||||||||||| | |||||||| || || || || | | Sbjct 1271 GGAGATGACGCATATTGGATTCTTGCTCTCGGTGCTGTTGGGATTGTAATTGGGTTAGCT 1330 Query 185543 CTCTACGGTTACAAGATTCTAAACGCCCTTGGCACTAAAATGGCAAAACTTACACCGAGT 185602 | || |||||||||||| | | | ||||| || |||||| ||| || || Sbjct 1331 ATTTATGGTTACAAGATTATGGAAGTTCTTGGTACACAAATGGTGAAATGCACTCCTTCA 1390 Query 185603 CGTGGTATTTGTATTGAACTTGGTGCAGCCGCTGTGATCATTTTGGGATCACGATTAGGT 185662 | || ||| ||||||| | ||||| | ||||| |||||| |||| || || | || Sbjct 1391 AGAGGATTTTCTATTGAATTAGGTGCCGTTGCTGTAATCATTATGGGTACAAGACTCGGA 1450 Query 185663 TGGCCTCTCTCTACGACACATTGCCAAGTTGGTGCAACCGTTGGTGTTGC 185712 || || || || |||||||||||||| ||||| || |||||| || Sbjct 1451 ATTCCACTTTCGACAACACATTGCCAAGTAGGTGCTACGTGTGGTGTAGC 1500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 184685 CATGTCGTAAAAACAATACGAAAAGGAATCAGCGATCAAGAATGTTTTGTTGACGACCCC 184744 ||||| ||| || || || ||||| || || |||||||| |||| ||| | || Sbjct 350 CATGTAACAAAGACTATTCGCAAAGGTATTGCNGACCAAGAATGCTTTGAAGACAATCCT 409 Query 184745 GGACTTCTCATGTATGGATGTTTATGTGTTATACTGTCAGTCGCTATATGG--TTAATTG 184802 | || |||||||||||| | |||||| | | | || || || ||| ||| ||| Sbjct 410 GCTCTGCTCATGTATGGAATGATGTGTGTTCTTTTCGCTGTTGCAATCTGGCTTTACTTG 469 Query 184803 TTGCGTCTTATTTTGAAATGCCTGTATCTACAACACATTCATGTGTCGGTGGCATGATTG 184862 ||| || | | |||||||||| |||||| ||||| ||||||||||| || ||| Sbjct 470 --GCGACTAAATGGAGAATGCCTGTAAGTACAACTCATTCTTGTGTCGGTGGTATTGTTG 527 Query 184863 GAATGACGATGGT 184875 | ||||| ||||| Sbjct 528 GTATGACTATGGT 540 >seq352 Length=10598 Score = 100 bits (110), Expect = 4e-16 Identities = 284/434 (65%), Gaps = 2/434 (0%) Strand=Plus/Minus Query 101899 ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAACT 101958 |||| || || |||||||||| ||||||||||| || || | | ||| | Sbjct 7520 ACATTCTCGCGTTCTTTGCTGCAAGTGATGGAATTGTAAACGAAAACTTGGCAACCAATT 7461 Query 101959 TTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAATG 102018 | || || |||||| |||||||| ||| || |||| | |||| | || || Sbjct 7460 TCATGGAAGACATGCAATGTGCTGAAGCGCGATGCTTTTATGGTTTTCAAATTGCTATTG 7401 Query 102019 AAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTG 102078 ||| | ||| ||| || | || || |||| || |||| || || | Sbjct 7400 AAAACATTCATTCGGAAGTGTATTCTCTTCTTATTGACACGTTAATTACTGAGAAAGCCG 7341 Query 102079 AGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATT 102138 |||| || || | || | || ||| |||| || || || || || |||| || | | Sbjct 7340 AGAAAAATCACTTGTTAAACGCAATCGAAACTGTCCCTTGCGTTAAAGAGAAGGCTGCAT 7281 Query 102139 GGGCTATGAAGTGGTTTGATACAAAGT-CGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 102197 ||||| | | ||| ||| | | | | ||||| | |||||||| ||||| | || || Sbjct 7280 GGGCTCTTCAATGGACTGACAAACAATACGCGT-CTTTTGCTGAACGACTTGTAGCGTTC 7222 Query 102198 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 102257 || ||| || || || |||||||||||||| || ||| ||||| |||| | || || Sbjct 7221 GCTGCTGTAGAAGGAATTTTCTTCTCTGGTTCATTTTGCAGTATTTTTTGGTTAAAAAAA 7162 Query 102258 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 102317 |||||| | |||||||| ||| ||||| || || | || || || || || || | Sbjct 7161 CGAGGTTTGATGCCAGGACTCACTTTCTCGAATGAATTAATTTCACGCGATGAAGGTTTA 7102 Query 102318 CACCAAGAGTTTGC 102331 ||| || ||||| Sbjct 7101 CACTGCGACTTTGC 7088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620694013129920