Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq458 138 1e-27 seq99 91.5 2e-13 >seq458 Length=35501 Score = 138 bits (152), Expect = 1e-27 Identities = 344/517 (67%), Gaps = 13/517 (3%) Strand=Plus/Minus Query 110713 ATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA---CGACCCGCC 110769 ||||| | ||||| ||||||||||| ||||||| ||||| || || | ||| | Sbjct 30802 ATATCACAATGCCAAGGTTCGAGATAAACAGCGAAAGATCCTTTTCGTTTTCCTCCCCCT 30743 Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 || | ||| || || || || |||| || || || | ||| || | || |||| || Sbjct 30742 TGATCAACGTAACGAGCAGTATCATTAAAAACTCTCAACATTGGTACAAGACCATTTGAA 30683 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCA 110889 |||||| || || | ||| ||| ||| ||||||| | ||| || |||||| Sbjct 30682 GAACCATTGGTTCCACGAATATAGGAGTTAGATCCACGAATATTGTGAATTGAAATACCA 30623 Query 110890 ATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCA 110949 |||||||| || |||| || |||||| | | | || || ||||||| || ||| Sbjct 30622 ATACCACCAGCATACTTCGAGATGCATGCACAATTTTTAAGAGTGTCATAAATTCCTTCA 30563 Query 110950 ATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCC 111009 || || ||| | || | | || ||||| || || ||||| ||||| || | || || Sbjct 30562 ATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATGACATTTGAGGGCGTCGAGTACCA 30503 Query 111010 GCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG--GACATCTTGTTGTATG 111067 ||||| || || || ||||| ||||| || | | || | |||||| | | || | Sbjct 30502 GCATTAAATAGGGTTGGTGTTGCATGTGTGTAATG--TTTAGTTGACATCATTTCATACG 30445 Query 111068 TGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATAT 111127 | || | | || | || | ||| ||||||| || || ||||||| ||| | Sbjct 30444 TTTCCAAAACTTTTGGAATATTATCCTTGTGTATACCAACTGCGACACGCATGAGCATGT 30385 Query 111128 ATTGAGG-CGTT--TCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGG 111184 |||||| || | | |||| ||| | ||||| | ||||| ||||| || Sbjct 30384 GTTGAGGACGCTCAACAATTA---CTCCGTTTACACGTAGTAGGTATGCACGCTCTAAGG 30328 Query 111185 TCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 |||||| |||||||| ||| |||| |||||||||| Sbjct 30327 TCTTGAATCCAAAGTAACCATAATCATAATCACGATC 30291 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || |||||||| || || || || || |||||||| || | |||||||| | | Sbjct 32304 CGTAGGTAATACATTCCAGTCTTCAGTCCTTTTTTCCATGCATAAAAGTGCATTGATGTG 32245 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATA--AACAAGTTCATCGACTGAGACTGATCGATGA 109525 ||||| | | ||| ||||| |||| || | ||||| |||||| | Sbjct 32244 AGTTTTCCAGTATTAGGAGCAGCCATATGAACA--TTAAGAGACTGTGACTGACATACAT 32187 Query 109526 ATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCT 109585 || |||||||||||| | ||| || | | ||||||||| |||||||||| ||||| | Sbjct 32186 ATGCACCACGATCAGCTGACATATCAAGTAAACACTTTTGTTTAATTTCCCAAACAGTTT 32127 Query 109586 TGTACAAATTCTTGATATCATCGGGAATGTCCACG-ATGTTTTGAATAGAGCCACCA 109641 | | || | || | ||||| ||||| ||| | || ||||||| |||||||||| Sbjct 32126 TAAATAATTGTTTTGTCTCATCAGGAAT-TCCTTGAATATTTTGAACAGAGCCACCA 32071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/128 (76%), Gaps = 6/128 (5%) Strand=Plus/Minus Query 109714 TTGACCACGACAAATTCACCAGCAAG---TGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 ||||| || ||||||||||||||| | | ||| || || || || | ||||| Sbjct 31890 TTGACAACAGTAAATTCACCAGCAAGAACTCTACGT--GAA-TAAATATTTGAAGTGTAT 31834 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 ||||||||||| ||||| || || | ||||| | ||| |||||||| ||||| ||||| Sbjct 31833 GGTTCGAAACATTCATTATTTCCCAATATTTGAGAAGTAGAAGCTGTTGGCATAGGAGCA 31774 Query 109831 ATGAGAAG 109838 |||||||| Sbjct 31773 ATGAGAAG 31766 >seq99 Length=19583 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 167538 ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTT 167597 ||| || ||||| | | ||||||||||||||||||| ||| | | | ||| || || Sbjct 6676 ATCTTTTCCACCAAGCAAACGTGTACCAAATTGACCACCTGGGTATAATAAATTAATATT 6617 Query 167598 ATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAACTTCGCC 167657 ||||||||| | | | | |||| | || || ||| | | ||||||||| || Sbjct 6616 ATTCGACCCAACAAAGTTTTGAGCCATACTCACAATAGTTCCTTGTAAGGAAACTTCACC 6557 Query 167658 GTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCATC 167717 || || |||||| | ||| | ||||| | || || || ||||| || || || | Sbjct 6556 ATGATGATAAGCAGAATGTTCTGAGACATAACCAGCTAATTGAGCAACTTTAATTTCTTT 6497 Query 167718 TTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCATC 167777 | || || || ||||||| | ||| ||| || | |||||||||||||| ||||| Sbjct 6496 AGTCAGTTTACGTTTAAAACATGCAAACAAAACTTTTCTTTGAGAAGGTTTGAATCCATC 6437 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 167538 ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTT 167597 ||| || ||||| | | ||||||||||||||||||| ||| | | | ||| || || Sbjct 12885 ATCTTTTCCACCAAGCAAACGTGTACCAAATTGACCACCTGGGTATAATAAATTAATATT 12944 Query 167598 ATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAACTTCGCC 167657 ||||||||| | | | | |||| | || || ||| | | ||||||||| || Sbjct 12945 ATTCGACCCAACAAAGTTTTGAGCCATACTCACAATAGTTCCTTGTAAGGAAACTTCACC 13004 Query 167658 GTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCATC 167717 || || |||||| | ||| | ||||| | || || || ||||| || || || | Sbjct 13005 ATGATGATAAGCAGAATGTTCTGAGACATAACCAGCTAATTGAGCAACTTTAATTTCTTT 13064 Query 167718 TTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCATC 167777 | || || || ||||||| | ||| ||| || | |||||||||||||| ||||| Sbjct 13065 AGTCAGTTTACGTTTAAAACATGCAAACAAAACTTTTCTTTGAGAAGGTTTGAATCCATC 13124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588930089320800