Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4407 143 3e-29 seq2023 143 3e-29 seq1166 143 3e-29 seq458 141 1e-28 seq352 114 2e-20 >seq4407 Length=2415 Score = 143 bits (158), Expect = 3e-29 Identities = 247/356 (69%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 176924 TGTTGTGATTCGTTCGCACACGGTGCCAATGATGTTGCCAATTCAATCGGACCATTTGCC 176983 ||||| ||| || | || ||||| ||||| ||||| || || || || || ||||| Sbjct 1160 TGTTGCGATAGTTTTTCTCATGGTGCAAATGACGTTGCTAACTCTATTGGTCCGTTTGCT 1219 Query 176984 GCCATTTACGCCATCTATAAATCCGGTACGGTCTCCAAGAATGCTGAAATGGGTAACGAC 177043 || ||||| | | ||||| | || ||| || ||||| |||| | || | ||| Sbjct 1220 GCAATTTATGTGGTTTATAATGCAGGAGAGGTTTCTAAGAAAAATGAACTTGGAGATGAC 1279 Query 177044 GCATATTGGATTCTCTCCCTCGGAGCTGGTGGAATAGTTGTGGGTCTCGCGACATATGGC 177103 |||||||||||||| | ||||| |||| ||| || || | || | || | ||||| Sbjct 1280 GCATATTGGATTCTTGCTCTCGGTGCTGTTGGGATTGTAATTGGGTTAGCTATTTATGGT 1339 Query 177104 TATAAGATTCTTGAGGCTCTTGGTACAAAAATGGCAAAACTTACACCGAGTCGTGGTATC 177163 || |||||| | || | |||||||||| |||||| ||| || || | || | Sbjct 1340 TACAAGATTATGGAAGTTCTTGGTACACAAATGGTGAAATGCACTCCTTCAAGAGGATTT 1399 Query 177164 TGTATTGAACTTGGCGCGGCCGCTGTCATCATTCTTGGCTCTCGCCTCGGGTGGCCACTC 177223 | ||||||| | || || | ||||| |||||| | || | | ||||| ||||| Sbjct 1400 TCTATTGAATTAGGTGCCGTTGCTGTAATCATTATGGGTACAAGACTCGGAATTCCACTT 1459 Query 177224 TCCACAACACATTGTCAAGTCGGTGCAAC-TGTGGGTGTCGCACTCTTTGAAGGTA 177278 || ||||||||||| ||||| ||||| || ||| ||||| || | |||||||| Sbjct 1460 TCGACAACACATTGCCAAGTAGGTGCTACGTGT-GGTGTAGCCTGGTGTGAAGGTA 1514 >seq2023 Length=5341 Score = 143 bits (158), Expect = 3e-29 Identities = 247/356 (69%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 176924 TGTTGTGATTCGTTCGCACACGGTGCCAATGATGTTGCCAATTCAATCGGACCATTTGCC 176983 ||||| ||| || | || ||||| ||||| ||||| || || || || || ||||| Sbjct 1160 TGTTGCGATAGTTTTTCTCATGGTGCAAATGACGTTGCTAACTCTATTGGTCCGTTTGCT 1219 Query 176984 GCCATTTACGCCATCTATAAATCCGGTACGGTCTCCAAGAATGCTGAAATGGGTAACGAC 177043 || ||||| | | ||||| | || ||| || ||||| |||| | || | ||| Sbjct 1220 GCAATTTATGTGGTTTATAATGCAGGAGAGGTTTCTAAGAAAAATGAACTTGGAGATGAC 1279 Query 177044 GCATATTGGATTCTCTCCCTCGGAGCTGGTGGAATAGTTGTGGGTCTCGCGACATATGGC 177103 |||||||||||||| | ||||| |||| ||| || || | || | || | ||||| Sbjct 1280 GCATATTGGATTCTTGCTCTCGGTGCTGTTGGGATTGTAATTGGGTTAGCTATTTATGGT 1339 Query 177104 TATAAGATTCTTGAGGCTCTTGGTACAAAAATGGCAAAACTTACACCGAGTCGTGGTATC 177163 || |||||| | || | |||||||||| |||||| ||| || || | || | Sbjct 1340 TACAAGATTATGGAAGTTCTTGGTACACAAATGGTGAAATGCACTCCTTCAAGAGGATTT 1399 Query 177164 TGTATTGAACTTGGCGCGGCCGCTGTCATCATTCTTGGCTCTCGCCTCGGGTGGCCACTC 177223 | ||||||| | || || | ||||| |||||| | || | | ||||| ||||| Sbjct 1400 TCTATTGAATTAGGTGCCGTTGCTGTAATCATTATGGGTACAAGACTCGGAATTCCACTT 1459 Query 177224 TCCACAACACATTGTCAAGTCGGTGCAAC-TGTGGGTGTCGCACTCTTTGAAGGTA 177278 || ||||||||||| ||||| ||||| || ||| ||||| || | |||||||| Sbjct 1460 TCGACAACACATTGCCAAGTAGGTGCTACGTGT-GGTGTAGCCTGGTGTGAAGGTA 1514 >seq1166 Length=8465 Score = 143 bits (158), Expect = 3e-29 Identities = 247/356 (69%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 176924 TGTTGTGATTCGTTCGCACACGGTGCCAATGATGTTGCCAATTCAATCGGACCATTTGCC 176983 ||||| ||| || | || ||||| ||||| ||||| || || || || || ||||| Sbjct 1160 TGTTGCGATAGTTTTTCTCATGGTGCAAATGACGTTGCTAACTCTATTGGTCCGTTTGCT 1219 Query 176984 GCCATTTACGCCATCTATAAATCCGGTACGGTCTCCAAGAATGCTGAAATGGGTAACGAC 177043 || ||||| | | ||||| | || ||| || ||||| |||| | || | ||| Sbjct 1220 GCAATTTATGTGGTTTATAATGCAGGAGAGGTTTCTAAGAAAAATGAACTTGGAGATGAC 1279 Query 177044 GCATATTGGATTCTCTCCCTCGGAGCTGGTGGAATAGTTGTGGGTCTCGCGACATATGGC 177103 |||||||||||||| | ||||| |||| ||| || || | || | || | ||||| Sbjct 1280 GCATATTGGATTCTTGCTCTCGGTGCTGTTGGGATTGTAATTGGGTTAGCTATTTATGGT 1339 Query 177104 TATAAGATTCTTGAGGCTCTTGGTACAAAAATGGCAAAACTTACACCGAGTCGTGGTATC 177163 || |||||| | || | |||||||||| |||||| ||| || || | || | Sbjct 1340 TACAAGATTATGGAAGTTCTTGGTACACAAATGGTGAAATGCACTCCTTCAAGAGGATTT 1399 Query 177164 TGTATTGAACTTGGCGCGGCCGCTGTCATCATTCTTGGCTCTCGCCTCGGGTGGCCACTC 177223 | ||||||| | || || | ||||| |||||| | || | | ||||| ||||| Sbjct 1400 TCTATTGAATTAGGTGCCGTTGCTGTAATCATTATGGGTACAAGACTCGGAATTCCACTT 1459 Query 177224 TCCACAACACATTGTCAAGTCGGTGCAAC-TGTGGGTGTCGCACTCTTTGAAGGTA 177278 || ||||||||||| ||||| ||||| || ||| ||||| || | |||||||| Sbjct 1460 TCGACAACACATTGCCAAGTAGGTGCTACGTGT-GGTGTAGCCTGGTGTGAAGGTA 1514 >seq458 Length=35501 Score = 141 bits (156), Expect = 1e-28 Identities = 436/666 (65%), Gaps = 9/666 (1%) Strand=Plus/Minus Query 106735 GAGACCTGGTGCCTTG-TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCT 106793 ||||||||| || || | ||| ||||| ||| ||| | | || | ||| || | Sbjct 30956 GAGACCTGG-GCATTCATTTGGGCAGAAGAGACTCCAATCTTGATTCTTTTGAACGCGTT 30898 Query 106794 TCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGT 106853 |||||| | || |||| ||| || ||||||||||||| || || ||||| | Sbjct 30897 CCATGAATAAATCAGGAACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCTTCTTCTT 30838 Query 106854 CACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGAT 106913 ||| || || | | | |||||| || | ||||| ||||| || || |||| Sbjct 30837 TACCATGATTCTTTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGTTCGAGAT 30778 Query 106914 AGACTGCGATAGATCCCTTTCGA---CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 106970 | || |||| |||||| ||||| | || |||||| || || || || || | | Sbjct 30777 AAACAGCGAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCAGTATCAT 30718 Query 106971 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAG 107030 |||| || | | |||||| | || ||||| ||| |||||| || || |||||| | Sbjct 30717 TAAAAACTCTCAACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGAATATAGG 30658 Query 107031 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 107090 | ||| | | | || || || || |||||||| ||||| |||| ||||| Sbjct 30657 AGTTAGATCCACGAATATTGTGAATTGAAATACCAATACCACCAGCATACTTCGAGATGC 30598 Query 107091 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAA 107150 ||||| | ||||||| |||| || || | || ||||| || || | | || | Sbjct 30597 ATGCACAATTTTTAAGAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATAGTCATGA 30538 Query 107151 GGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGT 107210 | || || ||||| || || | | | ||||||||||| || |||||||||||||| | Sbjct 30537 GAAAACAGGATGACATTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGTGTTGCAT 30478 Query 107211 GAATGAACATACCTTG-GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCC 107269 | || | || | | |||||| | || || || ||||| || ||| | ||| Sbjct 30477 GTGTGTA-ATGTTTAGTTGACATCATTTCATACGTTTCCAAAACTTTTGGAATATTATCC 30419 Query 107270 CCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCA 107329 ||| || || | || |||||||| | ||||| ||| || || | | | || Sbjct 30418 TTGTGTATACCAACTGCGACACGCATGAGCATGTGTTGAGGACGCTCAACAATTACTCCG 30359 Query 107330 TCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATA 107388 | | ||| | || || || | ||| | ||| |||| |||||||||||| ||||||| Sbjct 30358 TTTACACGTAGTAGGTATGCAC-GCTCTAAGGTCTTGAATCCAAAGTAACCATAATCATA 30300 Query 107389 GTCCCG 107394 || || Sbjct 30299 ATCACG 30294 >seq352 Length=10598 Score = 114 bits (126), Expect = 2e-20 Identities = 292/437 (67%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| ||||| || ||||| | |||||| ||||| || ||| Sbjct 7088 GCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCT 7147 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||| || || || |||||| ||||| ||| ||||| || |||||||| || Sbjct 7148 GGCATCAAACCTCGTTTTTTTAACCAAAAAATACTGCAAAATGAACCAGAGAAGAAAATT 7207 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTT-TGTGTCAAA 117452 || || ||| || ||||| | ||| || || || || || || | || | ||||| Sbjct 7208 CCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGA-CGCGTATTGTTTGTCAGT 7266 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||||| | |||||| ||||||| | || || || ||||||| ||| || | || Sbjct 7267 CCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAA 7326 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 117572 || || || || || | | || |||| | ||||||| | ||||| ||| Sbjct 7327 CAAGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTC 7386 Query 117573 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTC-GCTTAT 117629 ||||| ||||| || ||| |||| | | || || | |||||||| || || Sbjct 7387 CGAATGAATGTTTTCAATA--GCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACAT 7444 Query 117630 CTGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 |||| || ||| |||||| | | || || ||||||||||| |||| Sbjct 7445 -TGCATGTCTTCCATGAAATTGGTTGCCAAGTTTTCGTTTACAATTCCATCACTTGCAGC 7503 Query 117690 AAAGAATGCCAGGATGT 117706 |||||| || || |||| Sbjct 7504 AAAGAACGCGAGAATGT 7520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589934810996640