Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4040 136 5e-27 >seq4040 Length=2647 Score = 136 bits (150), Expect = 5e-27 Identities = 294/433 (68%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 154702 ATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTG 154761 || |||| | ||| ||||||| || ||| ||||| |||||||| |||||||| || Sbjct 2628 ATCATAATCGGAATATATGTTTAATTCCAACATCAGCGCATGGAACCAATCCTGCATCTG 2569 Query 154762 CTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACA 154821 | ||| ||||| |||||||| ||| | ||| || || |||| | | || | Sbjct 2568 CAGTCCAAGCAGGTATGAAAGTAGTACCAATTAAGACTGTAGAAAGTGGTGATGTTGATA 2509 Query 154822 TCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTA----TTATG 154877 | ||||| | || |||||| || || || ||| | | || || | ||| Sbjct 2508 TGGAAGATTT-GA-AAGAAA--AAGCAGAAAAACACAAGGATAATCTTGCTGCACTGATG 2453 Query 154878 ATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATC 154937 | ||||| |||||||| ||| ||||| ||| ||| ||||| | | | Sbjct 2452 GTCACATATCCATCTACTTTTGGAGTATTCGAAGAAGGAATTGTTGAGATAATTGATACT 2393 Query 154938 GTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGA 154997 || ||| |||||||||| |||||| | ||||| || ||| | || || || ||||| Sbjct 2392 GTACATACGCATGGTGGTCAAGTATATATGGATGGTGCTAATATGAACGCTCAAGTAGGG 2333 Query 154998 CTAGCAAAACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATT 155056 | || || | ||| || |||||||| |||||| |||| ||||||||||| || Sbjct 2332 TATACTTCTCC-TGGAAATATTGGAGCAGATGTGTGTCATTTAAATTTACATAAAACTTT 2274 Query 155057 CTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCT 155116 |||||||| ||||| ||||| ||||| || || ||| |||| ||||| || | |||| | Sbjct 2273 TTGTATTCCGCATGGTGGTGGTGGTCCAGGTGTTGGTTCTATTGGTGTTGCGAGACATTT 2214 Query 155117 CACACCATTTGTA 155129 |||| ||| || Sbjct 2213 AGCACCGTTTTTA 2201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579167650362240