Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq458 264 1e-65 >seq458 Length=35501 Score = 264 bits (292), Expect = 1e-65 Identities = 591/874 (68%), Gaps = 26/874 (3%) Strand=Plus/Minus Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 ||||| || |||||||| ||||| | |||| ||| |||||||| || || |||| | Sbjct 31225 ATAGACGCAAGATTACAGACAGCAATTTCATCTGGTGAAGTATATTCCATAATCTCAGTA 31166 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCG 48002 || ||||| |||||||||| || | ||||| || ||| | ||||| || Sbjct 31165 CAAAGATTTGACGATTTGATAGTTCCAAGATTTTTTTGGTTAGATTTGCTATTACAAGCA 31106 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTC-AATGATAGATTTCCA 48061 || ||| || |||| | || ||||| ||||| |||||||| || ||| | || ||| Sbjct 31105 TCTTTGAAACACATATAGGGAGTTCCGGTTTCGATCTGAGACTCCAATATTTGAAA-CCA 31047 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAA 48121 || | ||| || || | | |||||| | ||||||||||||||| || Sbjct 31046 AAGTTTTTGAGCTTTCATCGTTGTACGAGCTTTGCCTGAGTTTTCGTATTTAGTATA-AA 30988 Query 48122 CTTCT-CAAATTCATCCCCAT-ACACATTATCTAACCCAGGACATTCATTAGGACACATC 48179 || ||||||| ||| || ||| || | | | || || |||||||| || || | Sbjct 30987 GAGCTACAAATTCTTCCGAATGACA-ATCAGCGAGACCTGGGCATTCATTTGGGCAGAAG 30929 Query 48180 AATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCT 48239 | |||||| | || |||| || | ||| |||| ||| || | |||||| | Sbjct 30928 AGACTCCAATCTTGATTCTTTTGAACGCGTTCCATGAATAAATCAGGAACCCAAAGTCCA 30869 Query 48240 ATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAG 48299 ||| | ||| || | | |||||| || ||| |||| |||| |||| ||| || Sbjct 30868 TAAAAGAGATCTCTTGCACGCGCTTCTTCTTTACCATGATTCTTTTTCAGTTGAAGGAAT 30809 Query 48300 TCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTA 48359 || | |||||| |||||| ||||| | ||| | || | ||| |||||| Sbjct 30808 TCAAGAATATCACAATGCCAAGGTTCGAGATAAACAGCGAAAGATCCTTTTCGTTTTCCT 30749 Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | || | ||||||| ||| ||||||| |||||||| |||| |||| Sbjct 30748 CCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAACTCTCAACATTGGTACAAGACCA 30689 Query 48420 TTTGATATACCATTGGTTCC-CGAA-ATA----TAACTTCCACTAGCTCTTATATTACTA 48473 ||||| |||||||||||| |||| ||| | | ||||| | ||||| | Sbjct 30688 TTTGAAGAACCATTGGTTCCACGAATATAGGAGTTAGATCCACGA------ATATTGTGA 30635 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 ||||||||||| |||||||| || || || || ||||| |||||| || ||| Sbjct 30634 ATTGAAATACCAATACCACCAGCATACTTCGAGATGCATGCACAATTTTTAAGAGTGTCA 30575 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 ||||||||||| ||| || ||| ||||| | | |||||||| |||||||| || Sbjct 30574 TAAATTCCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATGACATTTGAGGG 30515 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 | | ||| || | |||||||| ||||| | |||||| | | ||| ||| | | Sbjct 30514 CGTCGAGTACCAGCATTAAATAGGGTTGGTGTTGCATGTGTGTAATGTTTAGTTGACATC 30455 Query 48654 AATTTATATGTTTCAATAAC----AGAATCTATATCCCATTGATGTATACCTATAGATAC 48709 | || ||| ||||| | ||| |||| | ||||| ||| |||||||| | | || Sbjct 30454 ATTTCATACGTTTCCAAAACTTTTGGAATAT-TATCC--TTG-TGTATACCAACTGCGAC 30399 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATT 48743 |||||| | ||| | |||||| | ||||||||| Sbjct 30398 ACGCATGAGCATGTGTTGAGGACGCTCAACAATT 30365 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 47317 GATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATG 47376 |||| |||| |||||| |||| || |||||||| ||| ||||| || |||| Sbjct 31892 GATTGACAACAGTAAATTCACCAGCAAGAACTCTACGTGAATAAATATTTGAAGTGTATG 31833 Query 47377 GTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAA 47436 |||| | | ||||||||||||| || ||||||| ||| || ||||| ||||| | |||| Sbjct 31832 GTTCGAAACATTCATTATTTCCCAATATTTGAGAAGTAGAAGCTGTTGGCATAGGAGCAA 31773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562064983619040